Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30840
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   3.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.2  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    23   3.2  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   5.7  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   9.9  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   9.9  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   9.9  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 609 GRQASFLCPNGTVFS 653
           G+Q  + CPNG VF+
Sbjct: 51  GQQELYDCPNGLVFA 65


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 378 APEPETVPVSAPTSFLSPSVKSY 446
           AP P + P S PT   S S  +Y
Sbjct: 74  APSPSSTPSSLPTQRTSTSNPTY 96


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 167 VITLYVYYRLINITCKNKYSKWEDLRFIIFIFCVS 271
           +I L V   LI  TC   +S W   +  I IF V+
Sbjct: 57  LILLMVLVNLIFNTCGEVFSAWVRCQDQILIFLVN 91


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
          protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 48 YSQPVLYCGPQQNSY 92
          YS P  YC P  N Y
Sbjct: 27 YSPPPSYCDPWYNPY 41


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 108 CGPSIYLNADRRLHYCDEV 164
           C P+ ++  +  L Y DEV
Sbjct: 102 CDPAKWIRLNNNLQYIDEV 120


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 238 FEIYYIHFLC 267
           F+ YY +FLC
Sbjct: 154 FQFYYTYFLC 163


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 108 CGPSIYLNADRRLHYCDEV 164
           C P+ ++  +  L Y DEV
Sbjct: 102 CDPAKWIRLNNNLQYIDEV 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,467
Number of Sequences: 336
Number of extensions: 4262
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)