Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30840
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    32   0.093
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    28   1.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.5  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    27   3.5  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   4.6  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   4.6  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 31.9 bits (69), Expect = 0.093
 Identities = 22/52 (42%), Positives = 27/52 (51%)
 Frame = +3

Query: 294  GGSEEVTRVKRVRAGSVPVARDPAQELDAPEPETVPVSAPTSFLSPSVKSYL 449
            GGS+ V   K+     VP+    +Q   A EP TV V +P S LSPSV   L
Sbjct: 1004 GGSQIVPPPKQPANRVVPLPPTASQRASAYEPPTVSVPSP-SALSPSVTPQL 1054


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 19  RVSCSSVYFNIRNRYCIAVHNKTVTKSVNPVDLRFTSMPIEDFIIVT 159
           +V+C  VY    NR C+        K VN    +  S P +  I+ T
Sbjct: 33  KVNCLEVYSYENNRLCLITSANIFAKIVNVKAFKPVSSPTDHIIVAT 79


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +3

Query: 339  SVPVARDPAQELDAPEPETVPVSAPTSFLSPSVKSYLELGMGIPGKPGTDYPILGAV 509
            +VPV          P     P +AP+S L PS  S+  +    P  P   +P   A+
Sbjct: 1491 NVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPS--PAPPAPQHPSAAAL 1545


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 360 PAQELDAPEPETVPVSAPTS--FLSPSVKSYLELGMGIPGKP 479
           P+ E     PET+P SAP S   LSPS       G G  GKP
Sbjct: 221 PSSEDSCSIPETLPFSAPKSRGSLSPSETPDFVAGPG--GKP 260


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +1

Query: 364 LRN*MLQNQKLCRCPRQHLSSVHPSNRTWNLVWVYPENLVPII 492
           LRN  +   ++     Q L    P+ + ++ ++ YP+ ++PI+
Sbjct: 207 LRNMRIMGLEILNLDVQDLKHYPPTKKLYHQLYSYPQEIIPIM 249


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +3

Query: 291 IGGSEEVTRVKRVRAGSVPVARDPAQELDAPEPETVPVSAPTSFLSPSVKSYLELGMGIP 470
           +GG+E ++ V    A S+P A +    L+A  P T+  + PT    P +      G    
Sbjct: 57  LGGNESMSAVATSAASSLPTAEN-GVSLNAASP-TIHSNTPTVVSHPVMSGSELKGEESH 114

Query: 471 GKPGT 485
             PGT
Sbjct: 115 NSPGT 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,353
Number of Sequences: 5004
Number of extensions: 67841
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)