Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30840
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0418 + 17979504-17980964 34 0.097
07_03_0415 + 17920383-17921843 34 0.097
02_05_0183 + 26537676-26537752,26538481-26538649,26538736-265389... 34 0.13
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 31 0.68
07_03_0425 - 18070607-18070712,18071771-18072744 30 2.1
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661... 30 2.1
10_07_0160 - 13656172-13656476,13656799-13657528 29 3.6
08_02_1545 - 27790328-27790358,27790512-27791110,27791428-277916... 29 3.6
>07_03_0418 + 17979504-17980964
Length = 486
Score = 34.3 bits (75), Expect = 0.097
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Frame = +3
Query: 294 GGSEEVTRVKRVRAGSVPVARDPAQELDAPEPETVPVSAPTSFLSPSVKSYLELGMGI-- 467
GG VT V V GS+P A D A+E+ P SA + SV ELG +
Sbjct: 117 GGFPPVTCV--VADGSMPFAADVAEEIGVPSLVFRTASACSVLAYLSVDRLFELGEVVLF 174
Query: 468 PGKPGTDYPILGAVRTPTFTVMKQQYPGFF----ADMENSLSSVGITVTSMGRQASFLCP 635
P D P+ G +F + ++ PG F D + + + I VT+ R A +
Sbjct: 175 PADGDLDEPVRGVPGMESF-LRRRDLPGNFRNCTEDQNDPIVQMLIEVTAHSRGARAVVL 233
Query: 636 NGTVFSQG 659
N +G
Sbjct: 234 NTAASMEG 241
>07_03_0415 + 17920383-17921843
Length = 486
Score = 34.3 bits (75), Expect = 0.097
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Frame = +3
Query: 294 GGSEEVTRVKRVRAGSVPVARDPAQELDAPEPETVPVSAPTSFLSPSVKSYLELGMGI-- 467
GG VT V V GS+P A D A+E+ P SA + SV ELG +
Sbjct: 117 GGFPPVTCV--VADGSMPFAADVAEEIGVPSLVFRTASACSVLAYLSVDRLFELGEVVLF 174
Query: 468 PGKPGTDYPILGAVRTPTFTVMKQQYPGFF----ADMENSLSSVGITVTSMGRQASFLCP 635
P D P+ G +F + ++ PG F D + + + I VT+ R A +
Sbjct: 175 PADGDLDEPVRGVPGMESF-LRRRDLPGNFRNCTEDQNDPIVQMLIEVTAHSRGARAVVL 233
Query: 636 NGTVFSQG 659
N +G
Sbjct: 234 NTAASMEG 241
>02_05_0183 +
26537676-26537752,26538481-26538649,26538736-26538910,
26539008-26539137,26540425-26540558,26540629-26540771,
26540894-26541092,26541183-26541514
Length = 452
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 381 PEPETVPVSAPTSFLSPSVKSYLELGMG-IPGKPGTD--YPILGAVRTPTFTVMKQQY 545
PEP T+PV +P++ P K +L + G +P K Y +LG +T T +K+ Y
Sbjct: 10 PEPRTMPVKSPSN--DPPTKPFLSVMYGRMPKKSNNTKYYEVLGVSKTATQDELKKAY 65
>02_01_0102 -
749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 360 PAQELDAPEPETVPVSAPTSFLSPSVKSYLELG-MGIPGKPGT 485
P E+ APE +T+P S P + S K L +G + +P + T
Sbjct: 530 PKVEVSAPEDKTIPASGPMQVMKASPKEPLRIGPVSMPEQTNT 572
>07_03_0425 - 18070607-18070712,18071771-18072744
Length = 359
Score = 29.9 bits (64), Expect = 2.1
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Frame = +3
Query: 327 VRAGSVPVARDPAQELDAPEPETVPVSAPTSFLSPSVKSYLELG-MGIPGKPGTDYPILG 503
V G +P+A D A+E+ P VSA + S+ ELG + P D P+ G
Sbjct: 127 VADGIMPLAIDIAEEIGVPALGFRTVSACSFLAYLSIPRLFELGELPFPAGGDLDEPVRG 186
Query: 504 AVRTPTFTVMKQQYPGFF-----ADMENS--LSSVGITVTSMGRQASFLCPNGTVFSQG 659
TF + ++ P F D +N L +V VT+ R+A L N + +G
Sbjct: 187 VPGMETF-LRRRDLPSFCRGGGGGDSQNDPMLQTVN-EVTAHSRKARALVLNTSASMEG 243
>03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,
6617328-6617469,6617567-6617938,6618056-6618187,
6618907-6619035,6619125-6621188
Length = 1176
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 387 PETVPVSAPTSFLSPSVKSYLELGMGIPGKPGTDYPI 497
P P S + PS LG G+PGK D+P+
Sbjct: 990 PWAAPASGYMQYAQPSHFYSNPLGFGVPGKQSPDFPV 1026
>10_07_0160 - 13656172-13656476,13656799-13657528
Length = 344
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 558 ADMENSLSSVGITVTSMGRQASFLCPNGTVFSQGVGFLRTGGLTFR-MCAF 707
A + +SLSS S+ R A LCPN T F + G TF C F
Sbjct: 64 ASVSSSLSSPLSISPSICRSARLLCPNSTYFQSLSSTVFIDGCTFSYSCTF 114
>08_02_1545 -
27790328-27790358,27790512-27791110,27791428-27791648,
27791852-27792071
Length = 356
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 354 RDPAQELDAPEPETVPVSAPTSFLSPSVKSYLELGMGIPGKPGTD 488
RD AQ + +PE +T+ ++ P L+ S Y E + I G G D
Sbjct: 138 RDDAQIITSPE-DTLLLTGPNRALAASDNIYFEFHLKIKGDEGVD 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,022,579
Number of Sequences: 37544
Number of extensions: 432484
Number of successful extensions: 1296
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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