Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30840
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10989| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_2764| Best HMM Match : Phytochelatin (HMM E-Value=0)                28   6.5  
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_20599| Best HMM Match : UPF0172 (HMM E-Value=7.2)                   28   6.5  
SB_10109| Best HMM Match : PA (HMM E-Value=0.0067)                     28   6.5  
SB_36165| Best HMM Match : YABBY (HMM E-Value=5.4)                     28   8.6  
SB_18601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     28   8.6  
SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)                       28   8.6  

>SB_10989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 357 DPAQELDAPEPETVPVSAPTSFLSPSVKSYLELGMGIPGKPGT 485
           D      AP+P TV    P S  S + ++   +G  +P KP T
Sbjct: 6   DALPRYHAPQPVTVSSGLPVSTSSQTSRATTSIGHPVPYKPNT 48


>SB_2764| Best HMM Match : Phytochelatin (HMM E-Value=0)
          Length = 413

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 690 TLNHQFAGSQRLGRTPYRWGRETMLD 613
           TLN      QR+ +TP+RW  E +LD
Sbjct: 225 TLNALCIDPQRIWKTPWRWYTEDLLD 250


>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 678

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 429 D*GKMLARTPAQFLVLEHLVPEQDLGRLVHCQ 334
           D G++LA T A++L + HL+ E    RL  CQ
Sbjct: 189 DNGRLLAITDARYLYVTHLLFELSEERLTGCQ 220


>SB_20599| Best HMM Match : UPF0172 (HMM E-Value=7.2)
          Length = 480

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 422 PQSIRQIVPGTWYGYTRKTWYRLSNFRSCPYTNFYCDEAAISRVF 556
           P   +QI   +W G    T  R +N +S  YTN Y   AA  R F
Sbjct: 35  PILYQQIPKSSWLGPEPPTRQRGNNLQSGTYTNIYTPFAASFRRF 79


>SB_10109| Best HMM Match : PA (HMM E-Value=0.0067)
          Length = 354

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 348 VARDPAQELDAPEPETVPVSAPTSFLSPSVKSYLEL 455
           V R+P  +  AP+ E  P S PT   +PS    L L
Sbjct: 70  VVREPGTKASAPKGELYPTSTPTPDNAPSYNQALLL 105


>SB_36165| Best HMM Match : YABBY (HMM E-Value=5.4)
          Length = 374

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 700 HIRNVKPPVRRKPTPWENTVPLGQRNDA*RPIDVTVMPTLDSEFSI 563
           H +N  PP +R PTP E  +   Q  +A +  DV ++  LD+ + +
Sbjct: 201 HHKNFVPPGKRSPTPMEMFLYRSQTANAYKTPDV-ILHALDTTWEL 245


>SB_18601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 690 TLNHQFAGSQRLGRTPYRWGRETMLD 613
           TLN      QR+ +TP+RW  E +LD
Sbjct: 61  TLNALRIDPQRIWKTPWRWFTEELLD 86


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 318 VKRVRAGSVPVARDPAQELDAPEPETVPVSAPTSFLSPSVKSYLELGMGIPGK 476
           +KR+RA         +   ++   E+V V+ PT  +SP++ S   LG  +  K
Sbjct: 744 LKRLRAMQQASLEGQSDHRESTSTESVQVARPTKLISPTLSSSHGLGRVVMNK 796


>SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)
          Length = 1019

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 402 VSAPTSFLSPSVKSYLELGMGIPGKPGTD 488
           VS P+   S     Y   G G PG+PG+D
Sbjct: 901 VSPPSGRNSARSSPYAHYGTGFPGRPGSD 929


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,671,969
Number of Sequences: 59808
Number of extensions: 523018
Number of successful extensions: 1593
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)