Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30840
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding pro...    31   0.81 
U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.        31   0.81 
AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and gl...    31   0.81 
AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and gl...    31   0.81 
U39745-1|AAA80443.1|  164|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC025724-5|AAG23374.1|  264|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical p...    29   3.3  
AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical p...    29   4.3  
U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion transpo...    29   4.3  
Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical p...    28   7.6  
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    28   7.6  
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF077541-3|AAM54172.1|  750|Caenorhabditis elegans Alpha-catulin...    28   7.6  
AF077541-2|AAL77190.1|  759|Caenorhabditis elegans Alpha-catulin...    28   7.6  
AF077541-1|AAL77189.1|  803|Caenorhabditis elegans Alpha-catulin...    28   7.6  

>U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding
           protein LAG-1 protein.
          Length = 673

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 21/75 (28%), Positives = 30/75 (40%)
 Frame = +3

Query: 378 APEPETVPVSAPTSFLSPSVKSYLELGMGIPGKPGTDYPILGAVRTPTFTVMKQQYPGFF 557
           +P PE    SA    LSPS  S+ ++     G  G D        +  F  + Q  P   
Sbjct: 93  SPTPELASPSAKRMRLSPSTSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIGQSTPNTS 152

Query: 558 ADMENSLSSVGITVT 602
           + ++ S SS G   T
Sbjct: 153 SFLDTSNSSFGAPST 167


>U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.
          Length = 673

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 21/75 (28%), Positives = 30/75 (40%)
 Frame = +3

Query: 378 APEPETVPVSAPTSFLSPSVKSYLELGMGIPGKPGTDYPILGAVRTPTFTVMKQQYPGFF 557
           +P PE    SA    LSPS  S+ ++     G  G D        +  F  + Q  P   
Sbjct: 93  SPTPELASPSAKRMRLSPSTSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIGQSTPNTS 152

Query: 558 ADMENSLSSVGITVT 602
           + ++ S SS G   T
Sbjct: 153 SFLDTSNSSFGAPST 167


>AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform b protein.
          Length = 671

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 21/75 (28%), Positives = 30/75 (40%)
 Frame = +3

Query: 378 APEPETVPVSAPTSFLSPSVKSYLELGMGIPGKPGTDYPILGAVRTPTFTVMKQQYPGFF 557
           +P PE    SA    LSPS  S+ ++     G  G D        +  F  + Q  P   
Sbjct: 91  SPTPELASPSAKRMRLSPSTSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIGQSTPNTS 150

Query: 558 ADMENSLSSVGITVT 602
           + ++ S SS G   T
Sbjct: 151 SFLDTSNSSFGAPST 165


>AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform a protein.
          Length = 673

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 21/75 (28%), Positives = 30/75 (40%)
 Frame = +3

Query: 378 APEPETVPVSAPTSFLSPSVKSYLELGMGIPGKPGTDYPILGAVRTPTFTVMKQQYPGFF 557
           +P PE    SA    LSPS  S+ ++     G  G D        +  F  + Q  P   
Sbjct: 93  SPTPELASPSAKRMRLSPSTSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIGQSTPNTS 152

Query: 558 ADMENSLSSVGITVT 602
           + ++ S SS G   T
Sbjct: 153 SFLDTSNSSFGAPST 167


>U39745-1|AAA80443.1|  164|Caenorhabditis elegans Hypothetical
           protein F41C6.2 protein.
          Length = 164

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 7   CAHNRVSCSSVYFNIRNRYCIAVHNKTVTKSVNPVDLRFTSMP 135
           C    ++CS  + N+RN Y I V +    K V P  ++    P
Sbjct: 11  CLTIYINCSDCFVNLRNSYVICVVDSVRRKKVEPDVMKIEKAP 53


>AC025724-5|AAG23374.1|  264|Caenorhabditis elegans Hypothetical
           protein Y67D8C.6 protein.
          Length = 264

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +3

Query: 303 EEVTRVKRVRAGSVPV--ARDPAQELDAPEPETVPVSAPTSFLSPSVKSYLELGMGIP-G 473
           EEV  + RV    V V  A D  +ELD P PE+    A     S S+K   E    +P G
Sbjct: 45  EEVEVMARVDEEDVMVVMAPDAVEELDDPVPESTSEEAAGPSASMSLKRSAE---DLPDG 101

Query: 474 KPGTDYPI 497
           +P T  PI
Sbjct: 102 EPSTKRPI 109


>Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical
           protein R08H2.13 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +2

Query: 50  FATGTVLRST--TKQLRNLSILWTFDLPQCRSKTSLL*RG*VITLYVYYRLINITCKNKY 223
           FA   +L++T  +K   +++I    +L  C     +L     +T+  YYR +++TC  K 
Sbjct: 75  FAAFNILKNTGFSKSFGSIAIGKLMELGSCYGMMIVL-----LTINFYYRYLSVTCPAKL 129

Query: 224 SKWEDLRFIIFIFCV 268
           +++      I++F +
Sbjct: 130 TRFSAKNSPIWVFLI 144


>AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical
           protein Y6E2A.1 protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +2

Query: 167 VITLYVYYRLINITCKNKYSKWEDLRFI-IFIFCV 268
           ++T+  YYR +++TC +K S++  L+F+ I+ F V
Sbjct: 63  LLTINFYYRYLSVTCPSKLSRF-SLKFVPIWTFIV 96


>Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical
           protein F54B11.11 protein.
          Length = 598

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 345 PVARDPAQELDAPEPETVPVSAPTSFLSPSVKSYLELGMGIP 470
           PV   PA     P P T PV+  T+  S +  S L   +G+P
Sbjct: 511 PVTSAPATTFITPVPFTPPVTNSTTIYSSNTGSTLSTTIGLP 552


>U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical
           protein F14D12.5 protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 413 WRGHRHSFWFWSI*FLSRISGDWYTASSNALYTSDF 306
           WR  +H FW W I  +  +S D     +  ++T+ F
Sbjct: 438 WRCSKHDFWIWIITAVVTLSSDIAQGVAAGIFTAIF 473


>AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion
           transporter SULP-2 protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 413 WRGHRHSFWFWSI*FLSRISGDWYTASSNALYTSDF 306
           WR  +H FW W I  +  +S D     +  ++T+ F
Sbjct: 438 WRCSKHDFWIWIITAVVTLSSDIAQGVAAGIFTAIF 473


>Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical
           protein B0379.7 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = +3

Query: 300 SEEVTRVKRVRAGSVPVARDPA----QELDAPEPETVPVSAPTSFLSP 431
           S   T+  R    +VPV   PA    Q+L+ P P   P SAP     P
Sbjct: 36  STRSTKSSRSSPKTVPVTEQPAAAPPQQLEQPTPAPAPESAPAPVQCP 83


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = +3

Query: 351 ARDPAQELDAPEPETVPVSAPTSFLSPSVKSYLELGMGIPGKPGTDYP 494
           A D A    AP PE  P  AP      S  S    G   P   G  YP
Sbjct: 520 APDAAPAEPAPVPEVAPAPAPAPAAPESDASGYSSGAAAPAGGGGSYP 567


>Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical
           protein F47B8.13 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
 Frame = +3

Query: 294 GGSEEVTRVKRV-----RAGSVPVARDPAQELDAPEPETVPVSAPTS--FLSPS 434
           GG    T+ +RV       G+ P A        APEPE  P  AP +   L+PS
Sbjct: 81  GGGSYPTKKRRVARDYAEGGAAPTAPAEPVPAPAPEPEAAPAPAPVAEPALAPS 134


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +3

Query: 300 SEEVTRVKRVRAGSVPVARDPAQELDAPEPETVPVSAPT 416
           S  +T V    A   P   D  QEL  P PE  PV  PT
Sbjct: 509 SPTITDVSLAIATPSPEESDDDQELILPSPEPSPVREPT 547


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 100 VNPVDLRFTSMPIEDFIIVTRLSYNPLRILSSYQYHL*KQIFKM 231
           +N +++   S+ I D   + + +Y P+ + +SYQ H+ K I K+
Sbjct: 369 INLINVENVSVSIFDNAGIKKATYEPIDLTTSYQDHVSKVIQKV 412


>AF077541-3|AAM54172.1|  750|Caenorhabditis elegans Alpha-catulin
           (catenin/vinculinrelated) protein 1, isoform d protein.
          Length = 750

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 483 YQVFRVYPYQVPGTI*RMD*GKMLARTPAQFLVLEHLVPEQDLGR 349
           Y+  R + Y+VPG+  + D   +L R P     L+ +V    +G+
Sbjct: 617 YRTVREFSYEVPGSAEKSDLSAILERIPLHCQQLQVMVKSPTVGK 661


>AF077541-2|AAL77190.1|  759|Caenorhabditis elegans Alpha-catulin
           (catenin/vinculinrelated) protein 1, isoform b protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 483 YQVFRVYPYQVPGTI*RMD*GKMLARTPAQFLVLEHLVPEQDLGR 349
           Y+  R + Y+VPG+  + D   +L R P     L+ +V    +G+
Sbjct: 617 YRTVREFSYEVPGSAEKSDLSAILERIPLHCQQLQVMVKSPTVGK 661


>AF077541-1|AAL77189.1|  803|Caenorhabditis elegans Alpha-catulin
           (catenin/vinculinrelated) protein 1, isoform a protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 483 YQVFRVYPYQVPGTI*RMD*GKMLARTPAQFLVLEHLVPEQDLGR 349
           Y+  R + Y+VPG+  + D   +L R P     L+ +V    +G+
Sbjct: 617 YRTVREFSYEVPGSAEKSDLSAILERIPLHCQQLQVMVKSPTVGK 661


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,390,531
Number of Sequences: 27780
Number of extensions: 391090
Number of successful extensions: 1400
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)