Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30840
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    28   0.10 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    28   0.10 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 121 FTSMPIEDFIIVTRLSYNPLRILS 192
           FTS+P+ED +++ R  +N L I S
Sbjct: 255 FTSLPLEDQVLLLRAGWNELLIAS 278


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 121 FTSMPIEDFIIVTRLSYNPLRILS 192
           FTS+P+ED +++ R  +N L I S
Sbjct: 255 FTSLPLEDQVLLLRAGWNELLIAS 278


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 646  TVPLGQRNDA*RPIDVTVMPTLDSEFS 566
            TV  G   D  RP+   +  ++DS++S
Sbjct: 1317 TVSSGSSEDHRRPLSEHIYSSIDSDYS 1343


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 463 VYPENLVP 486
           VYPENL+P
Sbjct: 41  VYPENLIP 48


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -3

Query: 685 KPPVRRKPTPWENTVPLGQRNDA*RPIDVTVMP-TLDSEFSISAKNPGYCCFITVKVG-- 515
           K  + +KP   + T P     D    ++  +   T   + SIS  N G+C  I++  G  
Sbjct: 111 KSILEKKPELVDATDPGEHNGDTVTDVEAGLASRTNPLDDSISQANEGFCAVISMHDGLV 170

Query: 514 VRTAPKI 494
           + T P I
Sbjct: 171 LYTTPSI 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,794
Number of Sequences: 438
Number of extensions: 4882
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)