Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30840
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24570.1 68415.m02934 WRKY family transcription factor identi...    28   5.3  
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ...    28   7.0  
At2g21480.1 68415.m02556 protein kinase family protein contains ...    28   7.0  
At4g21700.1 68417.m03142 hypothetical protein                          27   9.3  
At4g04920.1 68417.m00715 expressed protein                             27   9.3  
At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family p...    27   9.3  
At1g67710.1 68414.m07727 two-component responsive regulator fami...    27   9.3  

>At2g24570.1 68415.m02934 WRKY family transcription factor identical
           to WRKY transcription factor 17 GI:15991743 from
           [Arabidopsis thaliana]
          Length = 321

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 2/130 (1%)
 Frame = +3

Query: 324 RVRAGSVPVARDPAQELDAPEPETVPVSAPTSFLSPSVKSYLELGMGIPGKPGTDYPILG 503
           R R G  PV   P+  +  P P  V   APT   +P+  S+++          T   + G
Sbjct: 71  RFRRG--PVHSPPSSSV--PPPVKVTTPAPTQISAPAPVSFVQANQQSVTLDFTRPSVFG 126

Query: 504 AVRTPTFTVMKQQYPGFFADMENSLSSVGITVT-SMGRQAS-FLCPNGTVFSQGVGFLRT 677
           A +T +  V++     F     +S  S  IT   S+ + +S FL P   V     G    
Sbjct: 127 A-KTKSSEVVEFAKESFSVSSNSSFMSSAITGDGSVSKGSSIFLAPAPAVPVTSSGKPPL 185

Query: 678 GGLTFRMCAF 707
            GL +R   F
Sbjct: 186 SGLPYRKRCF 195


>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 809

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 504 AVRTPTFTVMKQQYPGFFADMENSLSSVGITVTSMGRQASFLCPNGTVFSQGVGFLR-TG 680
           +V++    V    Y  +   +E   +S+G  +  + R A   CPNG    Q V   R  G
Sbjct: 254 SVKSARDAVTPLAYLSYADQLEQKKTSIGQMLKKLARNARKACPNGNSLPQWVLTSRDRG 313

Query: 681 GL 686
           GL
Sbjct: 314 GL 315


>At2g21480.1 68415.m02556 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 871

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 363 AQELDAPEPETVPVSAPTS 419
           A+E++ P+P  VP +APTS
Sbjct: 811 AEEVETPKPVAVPAAAPTS 829


>At4g21700.1 68417.m03142 hypothetical protein 
          Length = 962

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 483 TDYPILGAVRTPTFTVMKQQYPGFFADMENSLSSVGITVTSMGRQASFLCP 635
           T +P   +   P+  +  Q YP  F  +  + S+  +TV S+    SF+ P
Sbjct: 3   TFWPSSSSSNHPSIFLYLQSYPSLFFLLFLTTSATSLTVASLVNPHSFIAP 53


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 428  SIRQIVPGTWYGYTRKTWYRLSNFRSCPYTNFYC 529
            S R +V  TW       WY++    + P T  YC
Sbjct: 1211 SRRDVVTATWKTGLEGVWYKVGYAHTFPLTFLYC 1244


>At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857
          Length = 280

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +3

Query: 321 KRVRAGSVPVARDPAQELDAPE---PETVPVSAPTSFLSPS 434
           K+  A   P   D     DAP    PET P SAP+   SP+
Sbjct: 195 KKGAATPAPAPADEGDYADAPPGLAPETAPASAPSESDSPA 235


>At1g67710.1 68414.m07727 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver
           domain; contains similarity to response regulator
           proteins from [Arabidopsis thaliana]
          Length = 521

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 533 HHSKSWCTDSS*NWIIGTRFSGYTHTKFQ 447
           HHS S  TD    W+ G RF   T  +FQ
Sbjct: 452 HHSVSLDTDLDLTWLQGERFLANTGLQFQ 480


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,101
Number of Sequences: 28952
Number of extensions: 351167
Number of successful extensions: 1109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)