Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30839
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   2.6  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    26   3.4  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   4.5  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   6.0  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 106 SVMSYGRRKRRSTSATPTDDMLLVQTVQITDKFGFDKQRAKNVTEDAVYVER 261
           S ++ G    R++++  T+D +L+   +IT+   F K  A+   E   Y+ER
Sbjct: 115 SKVNKGVNAMRNSTSNQTNDSILISPSEITNMDPFLKGSARWTAEHWDYLER 166


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 67  EPVQCDGGPNELRSVMSYGRRKRRSTSATPTDDMLLVQTVQITDKFGFDKQRAKNVTEDA 246
           EP+     P+E     S  RRK R +    + + +  +T  +T +        K   +D+
Sbjct: 43  EPMDISMSPDEKNLKKSTVRRKLRKSKPNSSSNQVSSRTRALTKRSNSSNAIIKANNQDS 102

Query: 247 VYV 255
           VYV
Sbjct: 103 VYV 105


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 294 WLLKHSHKFRRSLYIYCILCDILSTLFVESEFISNLDGLHE 172
           WL+K  H F ++  + C      S L V   F S L G++E
Sbjct: 243 WLIKERHYFNQNSKLRCAAFHPTSNLLVVG-FSSGLFGIYE 282


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 167 CFSCRPSRLLINSDS 211
           CF+CR S+LL++ D+
Sbjct: 244 CFACRSSQLLVSEDN 258


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +3

Query: 12  FVRSCAIPCLGDSLYA---YLRTSAM 80
           F  SCA+PC  DS +    +LRT A+
Sbjct: 95  FAWSCALPCFVDSFFPSNFFLRTYAL 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,587
Number of Sequences: 5004
Number of extensions: 41746
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)