Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30839
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6741| Best HMM Match : WD40 (HMM E-Value=0)                         29   2.0  
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.2  
SB_51560| Best HMM Match : ASC (HMM E-Value=1.6)                       27   8.2  

>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 714

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 263 GLSTYTASSVTFLARCLSNPNLSVIWTVCTRSISSVGVADVERLFLR 123
           GLS  + S+  FL     N NL  +WT+ T S       DV++ FL+
Sbjct: 198 GLSDTSGSAPQFLLASGGNDNLVRLWTIYTASGILTLSTDVDKHFLK 244


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 94   NELRSVMSYGRRKRRST--SATPTDDMLLVQTVQITDKFGFDKQRAKNVT 237
            N  R    + RRKRRST  S  PT+ M+   T  I  +   D +   N+T
Sbjct: 1482 NAYRPQSDFSRRKRRSTESSRVPTEFMIQPGTNSIVVREKLDYEARTNLT 1531


>SB_51560| Best HMM Match : ASC (HMM E-Value=1.6)
          Length = 435

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 112 MSYGRRKRRSTSAT-PTDDMLLVQT--VQITDKFGF 210
           ++Y R++RRST  T  TDDML  +    ++ +KF F
Sbjct: 354 LNYARKRRRSTGGTIVTDDMLQSEKDFGELDEKFDF 389


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,098,317
Number of Sequences: 59808
Number of extensions: 357924
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)