Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30839
         (572 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280612-1|AAQ21365.1|  309|Anopheles gambiae carbonic anhydrase...    27   0.57 
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   5.3  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    23   7.1  

>AY280612-1|AAQ21365.1|  309|Anopheles gambiae carbonic anhydrase
           protein.
          Length = 309

 Score = 26.6 bits (56), Expect = 0.57
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = -1

Query: 197 SVIWTVCTRSISSVGVADVERLFLRPYDITER 102
           SVIWTV T SI SV +  VER F   +D T R
Sbjct: 224 SVIWTVFTESI-SVSLEQVER-FKAIHDQTGR 253


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = -3

Query: 342 LQVLLVELPRKRPQLAWLLKHSHKFRRSLYIYCILCDILSTLFVESEFISNLDGLHE 172
           L++L          + WL +H H F+  +Y   IL ++        +F+ N  G+ +
Sbjct: 416 LRILQTRFEGTYKAVLWLREHKHLFQGKIYEPMIL-ELNVPALENVQFLENTIGVRD 471


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 100 LRSVMSYGRRKRRSTSATPTDDMLLVQTVQITDKFGFDKQRAKNVTED 243
           LR+ + YG ++      T  D+M    + Q+T     D++   N  +D
Sbjct: 741 LRNAVFYGGKREDENEDTKADNMNNNHSDQLTGDNSADERAVPNDADD 788


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,035
Number of Sequences: 2352
Number of extensions: 10982
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 54245403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)