Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30839
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39853-1|AAK39227.2|  390|Caenorhabditis elegans Hypothetical pr...    38   0.004
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    31   0.77 
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    31   0.77 
AC024831-2|AAN63422.1|  502|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC024831-1|AAN63421.1|  500|Caenorhabditis elegans Hypothetical ...    29   2.3  
U57054-2|AAL50324.1|  372|Caenorhabditis elegans Jun n-terminal ...    28   4.1  
U57054-1|AAA98724.2|  463|Caenorhabditis elegans Jun n-terminal ...    28   4.1  
U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclas...    28   4.1  
U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclas...    28   4.1  
AB024085-1|BAA82640.1|  463|Caenorhabditis elegans JNK-1 protein.      28   4.1  
U20864-12|AAK68358.2|  257|Caenorhabditis elegans Hypothetical p...    28   5.4  
U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine r...    27   9.5  
AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U39853-1|AAK39227.2|  390|Caenorhabditis elegans Hypothetical
           protein F13B9.6 protein.
          Length = 390

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +1

Query: 1   FKFPSSEVVQFRALVTPCMPTCEPVQCDGGPNELRSVMSYGRRKRRSTSATPTDDMLLVQ 180
           F+F S+  V F   V PC+ +C   QC   P+    V+   RR+R   ++T    + L  
Sbjct: 252 FQFTSNNFVHFECQVKPCIKSCHREQCIREPDTKIPVIPAHRRRRHEDNSTDVATLRLET 311

Query: 181 TVQIT 195
            ++I+
Sbjct: 312 VLEIS 316


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
            (drosophila nompa:no mechanoreceptor potential a) protein
            1, isoform b protein.
          Length = 1069

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 1    FKFPSSEVVQFRALVTPCMPTCEPVQC--DGGPNELRSVMSYGRRKR 135
            F+F SS  ++    V  C   CEPV+C   GG  +     S+GR+KR
Sbjct: 924  FRFDSSASIRVTCEVEICKGDCEPVECALTGGVKK-----SFGRKKR 965


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
            (drosophila nompa:no mechanoreceptor potential a) protein
            1, isoform a protein.
          Length = 1065

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 1    FKFPSSEVVQFRALVTPCMPTCEPVQC--DGGPNELRSVMSYGRRKR 135
            F+F SS  ++    V  C   CEPV+C   GG  +     S+GR+KR
Sbjct: 920  FRFDSSASIRVTCEVEICKGDCEPVECALTGGVKK-----SFGRKKR 961


>AC024831-2|AAN63422.1|  502|Caenorhabditis elegans Hypothetical
           protein Y55F3C.7b protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 1   FKFPSSEVVQFRALVTPCMPTCEPVQCD 84
           F+FP+++ ++   +VT C  +CE   CD
Sbjct: 225 FRFPNAKQLKISCIVTECDGSCEARTCD 252


>AC024831-1|AAN63421.1|  500|Caenorhabditis elegans Hypothetical
           protein Y55F3C.7a protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 1   FKFPSSEVVQFRALVTPCMPTCEPVQCD 84
           F+FP+++ ++   +VT C  +CE   CD
Sbjct: 225 FRFPNAKQLKISCIVTECDGSCEARTCD 252


>U57054-2|AAL50324.1|  372|Caenorhabditis elegans Jun n-terminal
           kinase protein 1,isoform b protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 355 VGNEDVLLQKLPNFFQALTHPHRCARSTMRASLVH 459
           V NE V ++KL   FQ +TH  R  R     SLV+
Sbjct: 49  VRNEQVAIKKLSRPFQNVTHAKRAYRELKLMSLVN 83


>U57054-1|AAA98724.2|  463|Caenorhabditis elegans Jun n-terminal
           kinase protein 1,isoform a protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 355 VGNEDVLLQKLPNFFQALTHPHRCARSTMRASLVH 459
           V NE V ++KL   FQ +TH  R  R     SLV+
Sbjct: 140 VRNEQVAIKKLSRPFQNVTHAKRAYRELKLMSLVN 174


>U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclase
           protein 7, isoforma protein.
          Length = 1045

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -1

Query: 230 FLARCLSNPNLSVIWTVCTR-SISSV---GVADVERLFLRPYDITERNSFGPPSHCTGSQ 63
           F+  CL  P +  +W  C+R SI+ V       ++  F+  Y + +    G      GS 
Sbjct: 621 FIGLCLDGPQMLSVWRFCSRGSIADVILKATIQMDNFFI--YSLIKDMVHG-LVFLHGSM 677

Query: 62  VGIQGVTKARNCTTSD 15
           VG  G+  ++ C   D
Sbjct: 678 VGYHGMLTSKCCLIDD 693


>U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclase
           protein 7, isoformb protein.
          Length = 1111

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -1

Query: 230 FLARCLSNPNLSVIWTVCTR-SISSV---GVADVERLFLRPYDITERNSFGPPSHCTGSQ 63
           F+  CL  P +  +W  C+R SI+ V       ++  F+  Y + +    G      GS 
Sbjct: 621 FIGLCLDGPQMLSVWRFCSRGSIADVILKATIQMDNFFI--YSLIKDMVHG-LVFLHGSM 677

Query: 62  VGIQGVTKARNCTTSD 15
           VG  G+  ++ C   D
Sbjct: 678 VGYHGMLTSKCCLIDD 693


>AB024085-1|BAA82640.1|  463|Caenorhabditis elegans JNK-1 protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 355 VGNEDVLLQKLPNFFQALTHPHRCARSTMRASLVH 459
           V NE V ++KL   FQ +TH  R  R     SLV+
Sbjct: 140 VRNEQVAIKKLSRPFQNVTHAKRAYRELKLMSLVN 174


>U20864-12|AAK68358.2|  257|Caenorhabditis elegans Hypothetical
           protein F32A5.8 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 369 VFVANCRSTLQVLLVELPRKRPQLAWLLKHSHKFRRSLYIYCILCDILSTLFV-ESEFIS 193
           VFV++  S+   L  E+ R         +++++F   LY Y  +C +L+   +   EF+S
Sbjct: 168 VFVSSVSSSHTGLKAEMTRSEKLNKLCPENANEFYYKLYAYSKMCQVLTAFKIHRDEFVS 227

Query: 192 N 190
           +
Sbjct: 228 H 228


>U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical
           protein ZK328.4 protein.
          Length = 532

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 461 MCTREARIVDLAQR*GCVRAWKKFGSFCSST-SSLPTAGPRCKYY 330
           +C     +VD   + G    WK++G+ CSS   SLP    RC  Y
Sbjct: 365 LCHAATWVVDRLHKEGHGPGWKRWGARCSSVFKSLPFI-ERCHSY 408


>AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical
           protein Y39E4B.2 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 13  SSEVVQFR-ALVTPCMPTCEPVQCDGGPNELR 105
           S+E+++F   L+  C+P  E   C G P  L+
Sbjct: 57  SAEIIEFNECLLVHCLPYMEECVCPGTPRSLK 88


>AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein98 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 119 YDITERNSFGPPSHCTG 69
           Y+I E+ S+GP  +CTG
Sbjct: 183 YNIIEKGSWGPKDYCTG 199


>AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical
           protein K07E8.5 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 369 VFVANCRSTLQVLLVELPRKRPQLAWLLKHSHKFRRS 259
           +F  + R+TL+ +++  P KR  + W+    HK ++S
Sbjct: 257 IFGTSFRATLKKVVLGSPAKRSAVLWINDEEHKNQQS 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,946,238
Number of Sequences: 27780
Number of extensions: 255339
Number of successful extensions: 736
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)