Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30839
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +1

Query: 70  PVQCDGGPNELRSVMSYGRRKRRSTSATPTDDMLLVQTVQITDKFGFD 213
           PV C  G +    +   G+++    +  P D  L V+  ++    G++
Sbjct: 59  PVSCISGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDNKLASNAGYN 106


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +1

Query: 70  PVQCDGGPNELRSVMSYGRRKRRSTSATPTDDMLLVQTVQITDKFGFD 213
           PV C  G +    +   G+++    +  P D  L V+  ++    G++
Sbjct: 59  PVSCISGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDNKLASNAGYN 106


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +1

Query: 70  PVQCDGGPNELRSVMSYGRRKRRSTSATPTDDMLLVQTVQITDKFGFD 213
           PV C  G +    +   G+++    +  P D  L V+  ++    G++
Sbjct: 59  PVSCISGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDNKLASNAGYN 106


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 569 YPESPGHDGG 540
           YPES GHD G
Sbjct: 702 YPESHGHDSG 711



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -3

Query: 405 GLEEVRQLLQQHV 367
           G+ +++QLLQQH+
Sbjct: 70  GIHQMQQLLQQHI 82


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 225 STLFVESEFISNLDGL 178
           S LFV S F++ L+GL
Sbjct: 388 SILFVSSPFLNGLEGL 403


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 23 LCNSVPW*LLVCLLANQ 73
          + N VPW L +CL   Q
Sbjct: 1  MANVVPWLLSICLFGLQ 17


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 169 LLVQTVQITD-KFGFDKQRAKNVTEDAVYVERPT 267
           L+VQ +     KF FD +   N+++ A+Y  + T
Sbjct: 767 LVVQEISSDGLKFAFDVKTTLNISDIALYPSQTT 800


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,514
Number of Sequences: 438
Number of extensions: 2954
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)