Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30839
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69810.1 68414.m08032 WRKY family transcription factor              31   0.72 
At5g18440.1 68418.m02172 hypothetical protein                          28   5.1  
At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04...    27   8.9  
At1g70430.1 68414.m08103 protein kinase family protein contains ...    27   8.9  
At1g58090.1 68414.m06583 F-box family protein contains F-box dom...    27   8.9  

>At1g69810.1 68414.m08032 WRKY family transcription factor
          Length = 387

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 518 TIANVDHVDMFSDSSKVPLMCTR---EARIVDLAQR*GCVRAWKKFGSFCSSTSSLPTAG 348
           ++ N +H D+  +  +  L  TR   +A   D +   GC   W+K+G   + T+ LP A 
Sbjct: 168 SVRNENHQDVLEEHEQTGLKKTRVCVKASCEDPSINDGC--QWRKYGQKTAKTNPLPRAY 225

Query: 347 PRC 339
            RC
Sbjct: 226 YRC 228


>At5g18440.1 68418.m02172 hypothetical protein
          Length = 451

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 352 AVGNEDVLLQKLPNFFQALTHPH 420
           AV N +++   LPNFFQ    PH
Sbjct: 93  AVANSNLMGHSLPNFFQPSLEPH 115


>At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430 
           contains Pfam PF04510 : Family of unknown function
           (DUF577)
          Length = 609

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -3

Query: 390 RQLLQQHVFVANCRSTLQVLLVELPRKRPQLAWLLKHSHKFRRSLYIYCILCDI 229
           RQL+ + + V+     L +++  L +++          +K  R+LY YC+ C++
Sbjct: 7   RQLIAREILVSESHEELAMIVDNLFKRKDS------EEYKTSRALYDYCVSCNL 54


>At1g70430.1 68414.m08103 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 594

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 366 FVANCRSTLQVLLVELPRKRPQLAWLLKH 280
           F  + R  +   LV+ P+KRP  A LLKH
Sbjct: 235 FSKSFRELIAACLVKDPKKRPTAAKLLKH 263


>At1g58090.1 68414.m06583 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 371

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 318 PRKRPQLAWLLKHSHKFRRSLYIYCILCDILSTLFVES 205
           P KRP+ AW+        + + I  +LC+  S+++V S
Sbjct: 329 PSKRPKAAWVYIVRGDLCKKIKIDQVLCEFQSSVYVPS 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,972,893
Number of Sequences: 28952
Number of extensions: 226950
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)