BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30839 (572 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g69810.1 68414.m08032 WRKY family transcription factor 31 0.72 At5g18440.1 68418.m02172 hypothetical protein 28 5.1 At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04... 27 8.9 At1g70430.1 68414.m08103 protein kinase family protein contains ... 27 8.9 At1g58090.1 68414.m06583 F-box family protein contains F-box dom... 27 8.9 >At1g69810.1 68414.m08032 WRKY family transcription factor Length = 387 Score = 30.7 bits (66), Expect = 0.72 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -1 Query: 518 TIANVDHVDMFSDSSKVPLMCTR---EARIVDLAQR*GCVRAWKKFGSFCSSTSSLPTAG 348 ++ N +H D+ + + L TR +A D + GC W+K+G + T+ LP A Sbjct: 168 SVRNENHQDVLEEHEQTGLKKTRVCVKASCEDPSINDGC--QWRKYGQKTAKTNPLPRAY 225 Query: 347 PRC 339 RC Sbjct: 226 YRC 228 >At5g18440.1 68418.m02172 hypothetical protein Length = 451 Score = 27.9 bits (59), Expect = 5.1 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 352 AVGNEDVLLQKLPNFFQALTHPH 420 AV N +++ LPNFFQ PH Sbjct: 93 AVANSNLMGHSLPNFFQPSLEPH 115 >At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04510 : Family of unknown function (DUF577)); common family comprised of At5g37410, At5g37400, At5g37920, At5g37460, At5g37650, At5g37470, At5g37420, At5g37430 contains Pfam PF04510 : Family of unknown function (DUF577) Length = 609 Score = 27.1 bits (57), Expect = 8.9 Identities = 13/54 (24%), Positives = 28/54 (51%) Frame = -3 Query: 390 RQLLQQHVFVANCRSTLQVLLVELPRKRPQLAWLLKHSHKFRRSLYIYCILCDI 229 RQL+ + + V+ L +++ L +++ +K R+LY YC+ C++ Sbjct: 7 RQLIAREILVSESHEELAMIVDNLFKRKDS------EEYKTSRALYDYCVSCNL 54 >At1g70430.1 68414.m08103 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 594 Score = 27.1 bits (57), Expect = 8.9 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -3 Query: 366 FVANCRSTLQVLLVELPRKRPQLAWLLKH 280 F + R + LV+ P+KRP A LLKH Sbjct: 235 FSKSFRELIAACLVKDPKKRPTAAKLLKH 263 >At1g58090.1 68414.m06583 F-box family protein contains F-box domain Pfam:PF00646 Length = 371 Score = 27.1 bits (57), Expect = 8.9 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -3 Query: 318 PRKRPQLAWLLKHSHKFRRSLYIYCILCDILSTLFVES 205 P KRP+ AW+ + + I +LC+ S+++V S Sbjct: 329 PSKRPKAAWVYIVRGDLCKKIKIDQVLCEFQSSVYVPS 366 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,972,893 Number of Sequences: 28952 Number of extensions: 226950 Number of successful extensions: 584 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 569 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 584 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1112061928 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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