Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30838
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB7E6F Cluster: PREDICTED: hypothetical protein;...    82   1e-14
UniRef50_Q8PYI0 Cluster: Conserved protein; n=1; Methanosarcina ...    34   3.9  
UniRef50_A7T1W3 Cluster: Predicted protein; n=2; Nematostella ve...    33   9.0  

>UniRef50_UPI0000DB7E6F Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 218

 Score = 82.2 bits (194), Expect = 1e-14
 Identities = 43/71 (60%), Positives = 54/71 (76%), Gaps = 7/71 (9%)
 Frame = +1

Query: 1   RHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKI----EKNVR-- 162
           RHLSMKKTIRKKIMRDLQQAFVEDPNEF+V++  PE+LKAE++ +++      +K  R  
Sbjct: 81  RHLSMKKTIRKKIMRDLQQAFVEDPNEFRVDDIPPEQLKAEINIQSLSFGTPSQKQGRTR 140

Query: 163 -KNDPTFLDML 192
              + TFLDML
Sbjct: 141 GNTENTFLDML 151


>UniRef50_Q8PYI0 Cluster: Conserved protein; n=1; Methanosarcina
           mazei|Rep: Conserved protein - Methanosarcina mazei
           (Methanosarcina frisia)
          Length = 310

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +1

Query: 13  MKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEA-VKIEKNVRK 165
           +KK  ++K+  DLQ  +   P++FKVE+  P K+  E+  +  ++ +K+ R+
Sbjct: 79  LKKEDKEKLKADLQDIWERYPDDFKVEDNEPLKVINEIMTKRFIQTQKSARE 130


>UniRef50_A7T1W3 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 719

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 531 LICDRKTDYERATWCA*CEFLNVLDSVKVNPILY 430
           +I   K DYE  T    C FL++L +  +NP++Y
Sbjct: 259 IIFQLKLDYEHDTLARYCTFLSLLSNALINPVIY 292


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,424,726
Number of Sequences: 1657284
Number of extensions: 10442632
Number of successful extensions: 27850
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27834
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)