Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30838
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    27   2.6  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   2.6  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   3.5  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   4.6  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   6.0  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   8.0  

>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
 Frame = +1

Query: 433 QNWVNFYAIENVKKLALSTPGRS-----FIIRFPIAYQLF----IIKPFNNP 561
           Q W+N  +I  +K    + PG S     F+   P+ +++F     +KP N P
Sbjct: 36  QEWMNLKSISQMKDFFSNFPGNSKANNHFLCNSPLKFEIFNNEKSVKPSNGP 87


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 16  KKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLK-AELSAEAVKIEKNVRKNDP 174
           K+ I+KK  R+ ++   EDP     E+    +LK A+   +A+  E   +K DP
Sbjct: 676 KEKIKKKFDRENEKLAAEDPKSVLPESELEVRLKAADELKKALDAELKSKKVDP 729


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +1

Query: 4   HLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKNDP 174
           +LS +K+  K + R +++      N  KVE ++PE+L A L   A + +   +++ P
Sbjct: 180 YLSERKSAAKPVGRTVEKL----ENATKVEKSAPEELFASLKKSASQKKSAAKESKP 232


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/69 (21%), Positives = 29/69 (42%)
 Frame = +1

Query: 361 VSSYLYGMGSFA*VCR*GRYSNCIQNWVNFYAIENVKKLALSTPGRSFIIRFPIAYQLFI 540
           +SS  YG   F+ +     +   +   ++ Y        + S  G SF++  P+AY + +
Sbjct: 106 LSSLKYGSTLFSWISVANAFGLLLLRLISIYDFLTYSSWSFSVKGGSFLLLLPLAYNITL 165

Query: 541 IKPFNNPLY 567
                 PL+
Sbjct: 166 FLLVIIPLF 174


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 67  EDPNEFKVENTSPEKLKAELSAE-AVKIEKNVRKNDPTFLDM 189
           E+ N    +    EK+K+ +    A +IEK  ++ DP  +DM
Sbjct: 379 ENVNNHNADEQMDEKIKSLVEGNSAYEIEKGAQEPDPMSIDM 420


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 22  TIRKKIMRDLQQAFVEDPNEFKVENT 99
           TIR   MRD  +  ++D N+F ++NT
Sbjct: 289 TIRHMHMRDAIEKLMKDFNQFCIDNT 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,192
Number of Sequences: 5004
Number of extensions: 46689
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)