Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30838
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606...    30   2.1  
03_02_0420 - 8298303-8299265,8299351-8299431,8299546-8299668,829...    29   2.7  
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    28   6.3  
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215...    28   8.3  
04_03_0770 + 19420249-19420359,19421691-19421763,19421887-194219...    28   8.3  

>12_01_0991 -
           10057736-10058249,10058412-10059241,10059266-10060633,
           10061785-10062327,10066274-10066498,10066590-10066640
          Length = 1176

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 226 PPWSPRSASLPSTCPRTSDRSC 161
           P +SP +AS+PS    +SDRSC
Sbjct: 301 PLFSPATASIPSAASTSSDRSC 322


>03_02_0420 -
           8298303-8299265,8299351-8299431,8299546-8299668,
           8299815-8299983,8300108-8300478
          Length = 568

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 232 AAPPWSPRSASLPSTCPRTSDRSCGRS 152
           A P W P     PST P  SDRS   S
Sbjct: 334 APPSWKPHKPPSPSTSPSWSDRSTATS 360


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = -1

Query: 688 KIGNPEKIKWSLA-VTSNNTCRNFPSP--VR*NNFRS---SKQNL 572
           K+G P K +WSLA +T   TCR  P P  +R  N+ +   SKQ L
Sbjct: 178 KLGFPPK-RWSLASLTEMVTCRELPKPSNIRMGNWEAYVLSKQQL 221


>12_02_0803 + 23318429-23318552,23318688-23319877,23320724-23321528,
            23321938-23322417,23322535-23322815,23323207-23323302,
            23323423-23323548,23324100-23325890
          Length = 1630

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 34   KIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAE--AVKIEKNVRKNDPTFL 183
            + ++DL  + V  P E  V+N S   +    +A   AV I + V+  DP++L
Sbjct: 1165 EFLKDLPNSLVWSPIELTVDNRSQILVLLNYAAGKIAVDINETVKNGDPSYL 1216


>04_03_0770 +
           19420249-19420359,19421691-19421763,19421887-19421964,
           19422223-19422284,19422404-19422472,19422672-19422700,
           19422784-19422991,19423071-19423301,19424079-19424132,
           19425344-19426292,19426853-19426863
          Length = 624

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 229 APPWSPRSASLPSTCPRTSD 170
           AP ++PR  SLP+T PR S+
Sbjct: 485 APKFTPRITSLPTTSPRISE 504


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,276
Number of Sequences: 37544
Number of extensions: 266552
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)