Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30838
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26560| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-09) 33 0.30
SB_25683| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 31 1.2
SB_5734| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 31 1.2
SB_25715| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 31 1.2
SB_24493| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 31 1.2
SB_15963| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 31 1.2
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36) 31 1.2
SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18) 31 1.2
SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 30 1.6
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 30 1.6
SB_25450| Best HMM Match : 7tm_1 (HMM E-Value=0.088) 29 2.8
SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 29 3.7
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 29 3.7
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 29 3.7
SB_3697| Best HMM Match : Mucin (HMM E-Value=4.2) 29 3.7
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 28 6.4
SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15) 28 6.4
SB_39683| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 28 6.4
SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15) 28 6.4
SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18) 28 6.4
SB_6083| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 28 6.4
SB_42776| Best HMM Match : rve (HMM E-Value=1.4e-24) 28 6.4
SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36) 28 6.4
SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 28 6.4
SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 28 6.4
SB_15389| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 28 6.4
>SB_26560| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-09)
Length = 556
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 531 LICDRKTDYERATWCA*CEFLNVLDSVKVNPILY 430
+I K DYE T C FL++L + +NP++Y
Sbjct: 337 IIFQLKLDYEHDTLARYCTFLSLLSNALINPVIY 370
>SB_25683| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 249
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P + +SCG + +++ S S GSY P
Sbjct: 99 VSAATWSPILATLTANPPESLSKSCGVVNIQGLQVKALFDSGSSGSYIHP 148
>SB_5734| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 508
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P + +SCG + +++ S S GSY P
Sbjct: 51 VSAATWSPILATLTANPPESLSKSCGVVNIQGLQVKALFDSGSSGSYIHP 100
>SB_25715| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 270
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P + +SCG + +++ S S GSY P
Sbjct: 51 VSAATWSPILATLTANPPESLSKSCGVVNIQGLQVKALFDSGSSGSYIHP 100
>SB_24493| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 176
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P + +SCG + +++ S S GSY P
Sbjct: 99 VSAATWSPILATLTANPPESLSKSCGVVNIQGLQVKALFDSGSSGSYIHP 148
>SB_15963| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 434
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P + +SCG + +++ S S GSY P
Sbjct: 241 VSAATWSPILATLTANPPESLSKSCGVVNIQGLQVKALFDSGSSGSYIHP 290
>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1677
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P + +SCG + +++ S S GSY P
Sbjct: 259 VSAATWSPILATLTANPPESLSKSCGVVNIQGLQVKALFDSGSSGSYIHP 308
>SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)
Length = 1046
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P + +SCG + +++ S S GSY P
Sbjct: 601 VSAATWSPILATLTANPPESLSKSCGVVNIQGLQVKALFDSGSSGSYIHP 650
>SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 528
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + PR+ +SCG + +++ S S SY P
Sbjct: 256 VSAATWSPTLATLTANPPRSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 305
>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 870
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + PR+ +SCG + +++ S S SY P
Sbjct: 256 VSAATWSPTLATLTANPPRSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 305
>SB_25450| Best HMM Match : 7tm_1 (HMM E-Value=0.088)
Length = 163
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -2
Query: 402 NLRKRSHSIQI*ANFYAIEKVKKLALIHVYTALVLIFISCFISS 271
+++++ +IQ + +++ + K + +H+ ALV IF CF+ S
Sbjct: 102 DMKQQRKAIQFNYSSSSVQNISKQSSLHIVGALVFIFDLCFLVS 145
>SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 323
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 51 VSAATWSPTLATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 100
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 164 VSAATWSPTLATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 213
>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 998
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 256 VSAATWSPTLATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 305
>SB_3697| Best HMM Match : Mucin (HMM E-Value=4.2)
Length = 120
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 184 PRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP*TRLGLQRTLAE 50
P T D C R++R + + PS S G+ S+P TR+ T+A+
Sbjct: 25 PYTRDDKCPRNTRTAKSHTTTTPSTSSGTTSKP-TRVPSNPTMAK 68
>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 540 VSAATWSPTLATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 589
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCG 158
V+A WSP A+L + P++ +SCG
Sbjct: 440 VSAATWSPTLATLTANPPKSLSKSCG 465
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 256 VSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 305
>SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15)
Length = 615
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 161 VSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 210
>SB_39683| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 579
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 220 VSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 269
>SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)
Length = 875
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 10 SMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKN 168
+M + K M D +A +ED NE +EN + + A V K + +N
Sbjct: 766 AMMENANKTRMEDANEAIMEDANEAMMENANKAWMDNTNEARMVNANKAMMEN 818
>SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18)
Length = 802
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 148 VSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 197
>SB_6083| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 176
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 99 VSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 148
>SB_42776| Best HMM Match : rve (HMM E-Value=1.4e-24)
Length = 627
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 88 VSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKAMFDSGSSESYIHP 137
>SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 1048
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 256 VSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 305
>SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 538
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 377 VSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 426
>SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 256 VSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 305
>SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 260
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 99 VSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 148
>SB_15389| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 462
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 235 VAAPPWSPRSASLPSTCPRTSDRSCGRSSRF*QLQRSVLPSISQGSYSRP 86
V+A WSP A+L + P++ +SCG + +++ S S SY P
Sbjct: 376 VSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHP 425
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,064,180
Number of Sequences: 59808
Number of extensions: 318085
Number of successful extensions: 755
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -