Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30838
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42013-1|AAB06496.1|  415|Caenorhabditis elegans UNC-24 protein.       29   2.4  
AF045644-5|AAC02604.1|  415|Caenorhabditis elegans Uncoordinated...    29   2.4  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    29   2.4  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    29   2.4  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    28   7.5  
AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical p...    27   9.9  

>U42013-1|AAB06496.1|  415|Caenorhabditis elegans UNC-24 protein.
          Length = 415

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 183 QERRIVLADVLLDFNSFSAQFCLQFLRARILDLKLV 76
           Q+RRI+ A++  +  SF+ QF ++     I D+K+V
Sbjct: 199 QDRRIISANLKDELGSFTCQFGVEITDVEISDVKIV 234


>AF045644-5|AAC02604.1|  415|Caenorhabditis elegans Uncoordinated
           protein 24 protein.
          Length = 415

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 183 QERRIVLADVLLDFNSFSAQFCLQFLRARILDLKLV 76
           Q+RRI+ A++  +  SF+ QF ++     I D+K+V
Sbjct: 199 QDRRIISANLKDELGSFTCQFGVEITDVEISDVKIV 234


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoformb protein.
          Length = 1420

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -2

Query: 162  ADVLLDFNSFSAQFCLQFLRARILDLKLVWVFNERLLKVAHYLFPNSLLHTEV 4
            +DV++ F  + +Q  L+ +    +DLK+V  +   LL+   YL  + ++H ++
Sbjct: 1192 SDVII-FMEYCSQGTLERICHGKMDLKMVRQYTNSLLRAVQYLHSHKIIHRDI 1243


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoforma protein.
          Length = 1418

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -2

Query: 162  ADVLLDFNSFSAQFCLQFLRARILDLKLVWVFNERLLKVAHYLFPNSLLHTEV 4
            +DV++ F  + +Q  L+ +    +DLK+V  +   LL+   YL  + ++H ++
Sbjct: 1192 SDVII-FMEYCSQGTLERICHGKMDLKMVRQYTNSLLRAVQYLHSHKIIHRDI 1243


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 151  SRF*QLQRSVLPSISQGSYSRP*TR 77
            SRF  L+R+  PS+ QG+Y+ P  R
Sbjct: 1187 SRFLSLRRTAKPSLLQGAYTNPNVR 1211


>AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical
           protein F17A9.2 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 703 FLGFQKIGNPEKIKWSLA 650
           F+G   IGNPEK KW  A
Sbjct: 216 FIGLAAIGNPEKQKWLYA 233


>Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical
           protein T03F6.2 protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 88  VENTSPEKLKAELSAEAVKIEKNVRKND 171
           VEN  PE+ + E + E VK EK  R+ D
Sbjct: 405 VENEQPEEEEKECTPEVVKKEKKKRRAD 432


>Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 28  RKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKND 171
           +KK   DLQ+      ++ KV++  PEKL  E+   A  +  N  +ND
Sbjct: 215 KKKKSSDLQEELEMAQHDGKVDD-QPEKLSDEIKKWASNLSLNKEEND 261


>Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 28  RKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKND 171
           +KK   DLQ+      ++ KV++  PEKL  E+   A  +  N  +ND
Sbjct: 215 KKKKSSDLQEELEMAQHDGKVDD-QPEKLSDEIKKWASNLSLNKEEND 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,162
Number of Sequences: 27780
Number of extensions: 252091
Number of successful extensions: 771
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)