Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30838
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10920.1 68417.m01775 transcriptional coactivator p15 (PC4) f...    29   2.3  
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    29   4.0  
At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    28   5.2  
At4g27595.1 68417.m03964 protein transport protein-related low s...    28   6.9  
At1g65010.1 68414.m07368 expressed protein similar to endosome-a...    28   6.9  
At5g24000.1 68418.m02820 expressed protein contains Pfam profile...    27   9.2  
At1g61410.1 68414.m06920 tolA protein-related contains weak simi...    27   9.2  

>At4g10920.1 68417.m01775 transcriptional coactivator p15 (PC4)
           family protein (KELP) similar to SP|P53999 Activated RNA
           polymerase II transcriptional coactivator p15 (PC4)
           (p14) {Homo sapiens}; contains Pfam profile PF02229:
           Transcriptional Coactivator p15 (PC4); supporting cDNA
           gi|2997685|gb|AF053303.1|AF053303
          Length = 165

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 16  KKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVK 144
           K+ I K ++  L ++ +++  EFKV   + EKL  +LS ++ K
Sbjct: 6   KEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHK 48


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 16  KKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKNDPTFL 183
           K   RKK  + ++   VE P E K      E+ + E   E  ++EK + +  PT L
Sbjct: 163 KPVERKKAEKPIELKQVEKPFERKQVEKPVERKQVEKPVERKQVEKPIERKRPTKL 218


>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
            family protein similar to SP|P50532 Chromosome assembly
            protein XCAP-C {Xenopus laevis}; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 7    LSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAEL 126
            L M++   KK + DLQ AF +   + + +   P+KL+A L
Sbjct: 970  LEMREKGYKKKLNDLQIAFTKHMEQIQKDLVDPDKLQATL 1009


>At4g27595.1 68417.m03964 protein transport protein-related low
            similarity to SP|P25386 Intracellular protein transport
            protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 7    LSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIE--KNVRKN 168
            LS+K T   + + D++Q   +   E K      EKLKA+ ++   KIE  KN++++
Sbjct: 907  LSLKTT---EELSDVKQTLADKEKELKTAVVENEKLKAQAASSFQKIEELKNLKQS 959


>At1g65010.1 68414.m07368 expressed protein similar to
            endosome-associated protein (GI:1016368) [Homo sapiens];
            similar to Centromeric protein E (CENP-E protein)
            (Swiss-Prot:Q02224) [Homo sapiens]
          Length = 1318

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 1    RHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEK 153
            + +S  KTI +  + DL+Q+ +    E +      EKLKAE +    +IE+
Sbjct: 991  KQVSTLKTIDE--LSDLKQSLIHKEKELQAAIVENEKLKAEAALSLQRIEE 1039


>At5g24000.1 68418.m02820 expressed protein contains Pfam profile
           PF05684: Protein of unknown function (DUF819)
          Length = 443

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 617 WKVPASVIGSHGQGPLNFFRVPDFLE 694
           WK+ A+++GS+  G LNF  + + L+
Sbjct: 189 WKIAAALMGSYIGGSLNFVAISEALQ 214


>At1g61410.1 68414.m06920 tolA protein-related contains weak
           similarity to Swiss-Prot:P19934 TolA protein
           [Escherichia coli]
          Length = 118

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -2

Query: 528 ICDRKTDYERATWCA*CEFLNVLDSVK 448
           +CD KT++E AT+    +FL+VL++ K
Sbjct: 35  LCDEKTEFENATY---AKFLSVLNAKK 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,909,093
Number of Sequences: 28952
Number of extensions: 233510
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)