Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30837
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   1.1  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   1.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.6  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   3.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   3.5  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 568  RWHFRQLTWLRVSKP-RHPVFPLTLNR 645
            RWH   L WL+ SK  R P++ +  NR
Sbjct: 1800 RWHSMMLFWLKPSKQIRPPIYSMRQNR 1826


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +1

Query: 409 DRETLFFTSVRAVPSTTKRKEGNTLKIATQSVINFSGDQKV*RIPYARLRRNWRWHFRQL 588
           D ETL +T VR++      +EG+       +V  + G      I    L   W +++ Q 
Sbjct: 279 DLETLSWTEVRSIGRFPGPREGHQATTIDDTVYIYGGRDNKGLI----LNELWAFNYSQQ 334

Query: 589 TWLRVSKP 612
            W  VS P
Sbjct: 335 RWSLVSNP 342


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +1

Query: 22   IVLLISTPPVFW----RGYS-YFLRVTIYENLHNKG 114
            IVLLI  PP+F       YS  F RVTI+   HN+G
Sbjct: 1094 IVLLILLPPLFGIFSVALYSGAFSRVTIFNGSHNRG 1129


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 574 HFRQLTWLRVSKPRHPVFPLTLNRP*EIGGKSSLKSRWIS 693
           H RQ  ++R  + RH  F  TL+ P     + +  +R IS
Sbjct: 395 HLRQEEYVREQQARHRDFGFTLSNPAPTSARPATSTRTIS 434


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 568  RWHFRQLTWLRVSKP-RHPVFPLTLNR 645
            RWH   L WLR S+  R P+F    NR
Sbjct: 1840 RWHSVLLFWLRPSRQIRPPIFSTKQNR 1866


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,281
Number of Sequences: 5004
Number of extensions: 70335
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)