Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30837
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076)                29   3.7  
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)             28   8.5  
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                28   8.5  
SB_14468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)                28   8.5  

>SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076)
          Length = 558

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = +2

Query: 368 ICYA---LCTLERRWRKTEKPFSSLAYG 442
           +CYA   LC +ERR+ +TEK   S+ +G
Sbjct: 154 VCYASGSLCDVERRYSQTEKEALSIVWG 181


>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
          Length = 2232

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 92  MKTCITKG--IVTVS-LTAILLSCSSAWAAGKGGIGLAATRLVYS 217
           ++ C+TK   +VTV+ + AILL+C + W+   G I        YS
Sbjct: 153 IRECMTKTGFVVTVTAIVAILLNCIAVWSCVTGVIHFMLLSFFYS 197


>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 356 RQMRICYALCTLERRWRKTEKPFSSLAYGQSLQQ 457
           R +  CY LC   RR+  T KP S+ A  Q+ Q+
Sbjct: 29  RTLPACYQLCN--RRYVSTNKPVSAAAAAQASQK 60


>SB_14468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +1

Query: 535 RIPYARLRRNWRWHFRQLTWLRVSKP--RHPVFPLTLNR 645
           ++P     + W WH R+       KP  RHP  P  L R
Sbjct: 195 KVPATTRAQEWNWHRRKERSENRGKPKSRHPQIPCVLRR 233


>SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)
          Length = 1821

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 464 RFVVEGTARTLVKKRVSLSFANGAPMYIM 378
           +F   GTART++  R+S  F    P +I+
Sbjct: 555 QFAATGTARTIIANRISFCFNFTGPSFIV 583


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,512,495
Number of Sequences: 59808
Number of extensions: 537145
Number of successful extensions: 1117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)