Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30837
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    24   1.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.2  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   2.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.7  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   8.6  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 332 HHRYLC*IRQMRICYALCTLERR 400
           ++RYL   R++ I +ALC  ER+
Sbjct: 29  YNRYLTRRRRIEIAHALCLTERQ 51


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 332 HHRYLC*IRQMRICYALCTLERR 400
           ++RYL   R++ I +ALC  ER+
Sbjct: 291 YNRYLTRRRRIEIAHALCLTERQ 313


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 335 HRYLC*IRQMRICYALCTLERR 400
           +RYL   R++ I +ALC  ER+
Sbjct: 30  NRYLTRRRRIEIAHALCLTERQ 51


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 269 GTSGLCYVHPVKFA 228
           G + LC+V+P+ FA
Sbjct: 126 GATSLCFVYPLDFA 139


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 269 GTSGLCYVHPVKFA 228
           G + LC+V+P+ FA
Sbjct: 126 GATSLCFVYPLDFA 139


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +1

Query: 544 YARLRRNWR 570
           Y++L+RNWR
Sbjct: 27  YSKLKRNWR 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,820
Number of Sequences: 438
Number of extensions: 4913
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)