Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30834
(488 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB6C2C Cluster: PREDICTED: similar to Histone H1... 67 2e-10
UniRef50_P02255 Cluster: Histone H1; n=33; Endopterygota|Rep: Hi... 66 3e-10
UniRef50_A6YPT1 Cluster: Truncated histone H1; n=1; Triatoma inf... 63 3e-09
UniRef50_UPI00015B4F73 Cluster: PREDICTED: similar to histone H1... 61 1e-08
UniRef50_UPI00015B604D Cluster: PREDICTED: similar to histone H2... 53 3e-06
UniRef50_Q175E9 Cluster: Histone H1, putative; n=2; Aedes aegypt... 51 2e-05
UniRef50_Q99282 Cluster: Histone H1.2, embryonic; n=7; Coelomata... 50 2e-05
UniRef50_Q2F5R0 Cluster: Histone H1; n=1; Bombyx mori|Rep: Histo... 48 8e-05
UniRef50_P19375 Cluster: Histone H1, early embryonic; n=9; Deute... 47 3e-04
UniRef50_Q26072 Cluster: Sea urchin (P. miliaris) histones H4, H... 44 0.002
UniRef50_P06894 Cluster: Histone H1A, sperm; n=3; Eumetazoa|Rep:... 44 0.002
UniRef50_P16401 Cluster: Histone H1.5; n=36; Eukaryota|Rep: Hist... 44 0.002
UniRef50_P16402 Cluster: Histone H1.3; n=169; Eukaryota|Rep: His... 44 0.002
UniRef50_P02256 Cluster: Histone H1, gonadal; n=24; cellular org... 42 0.007
UniRef50_P15864 Cluster: Histone H1.2; n=20; Eumetazoa|Rep: Hist... 41 0.013
UniRef50_Q16NP1 Cluster: Histone H1, putative; n=1; Aedes aegypt... 40 0.039
UniRef50_UPI000065CCEB Cluster: Histone H1.0 (Histone H1(0)) (Hi... 39 0.069
UniRef50_Q4SKP6 Cluster: Chromosome undetermined SCAF14565, whol... 39 0.069
UniRef50_UPI000066070C Cluster: Homolog of Gallus gallus "Histon... 38 0.12
UniRef50_Q5BY91 Cluster: SJCHGC01769 protein; n=8; Eumetazoa|Rep... 38 0.12
UniRef50_Q0P452 Cluster: Zgc:153405; n=27; Euteleostomi|Rep: Zgc... 37 0.21
UniRef50_Q18336 Cluster: Histone H1.X; n=2; Caenorhabditis|Rep: ... 37 0.21
UniRef50_UPI0000E81065 Cluster: PREDICTED: similar to Cyclin F; ... 36 0.37
UniRef50_P06895 Cluster: Histone H1B, sperm; n=1; Platynereis du... 36 0.37
UniRef50_UPI00003614D0 Cluster: Histone H1.1.; n=1; Takifugu rub... 35 1.1
UniRef50_Q4T9L9 Cluster: Chromosome undetermined SCAF7535, whole... 35 1.1
UniRef50_P07305 Cluster: Histone H1.0 (Histone H1(0)); n=26; Eum... 34 2.0
UniRef50_UPI0000F1F493 Cluster: PREDICTED: hypothetical protein;... 33 2.6
UniRef50_Q4SXC9 Cluster: Chromosome undetermined SCAF12481, whol... 33 2.6
UniRef50_O17536 Cluster: Histone H1.4; n=6; Caenorhabditis|Rep: ... 33 2.6
UniRef50_A6NI71 Cluster: Uncharacterized protein HP1BP3; n=43; T... 33 3.4
UniRef50_Q4TWL1 Cluster: Histone H1-like; n=1; Caenorhabditis re... 33 4.5
UniRef50_P15870 Cluster: Histone H1-delta; n=3; Deuterostomia|Re... 32 6.0
>UniRef50_UPI0000DB6C2C Cluster: PREDICTED: similar to Histone H1;
n=2; Apis mellifera|Rep: PREDICTED: similar to Histone
H1 - Apis mellifera
Length = 229
Score = 67.3 bits (157), Expect = 2e-10
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = +3
Query: 3 KVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+VD EKLAPFI++YLK AV SGT++QTKGKGASGSFKL
Sbjct: 71 EVDGEKLAPFIKRYLKGAVTSGTVVQTKGKGASGSFKL 108
>UniRef50_P02255 Cluster: Histone H1; n=33; Endopterygota|Rep:
Histone H1 - Drosophila melanogaster (Fruit fly)
Length = 256
Score = 66.5 bits (155), Expect = 3e-10
Identities = 31/38 (81%), Positives = 35/38 (92%)
Frame = +3
Query: 3 KVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
K DA+KLAPFI+KYLK+AV +G LIQTKGKGASGSFKL
Sbjct: 80 KCDAQKLAPFIKKYLKSAVVNGKLIQTKGKGASGSFKL 117
>UniRef50_A6YPT1 Cluster: Truncated histone H1; n=1; Triatoma
infestans|Rep: Truncated histone H1 - Triatoma infestans
(Assassin bug)
Length = 197
Score = 63.3 bits (147), Expect = 3e-09
Identities = 28/37 (75%), Positives = 35/37 (94%)
Frame = +3
Query: 6 VDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
VDAEK++ FIRKY+K+AVESG L+QTKGKGA+GSF+L
Sbjct: 75 VDAEKMSLFIRKYIKSAVESGELVQTKGKGAAGSFRL 111
>UniRef50_UPI00015B4F73 Cluster: PREDICTED: similar to histone H1;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
histone H1 - Nasonia vitripennis
Length = 201
Score = 60.9 bits (141), Expect = 1e-08
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = +3
Query: 3 KVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
K+DAEKL+PFI+KYLK+ V + L+QTKGKGA+GSFKL
Sbjct: 93 KLDAEKLSPFIKKYLKSGVVAKKLVQTKGKGAAGSFKL 130
>UniRef50_UPI00015B604D Cluster: PREDICTED: similar to histone H2B;
n=4; Nasonia vitripennis|Rep: PREDICTED: similar to
histone H2B - Nasonia vitripennis
Length = 300
Score = 53.2 bits (122), Expect = 3e-06
Identities = 23/38 (60%), Positives = 31/38 (81%)
Frame = +3
Query: 3 KVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
K D +K + FI+K+LK+AVE T++QTKG GA+GSFKL
Sbjct: 73 KCDIDKQSTFIKKFLKSAVEKKTIVQTKGSGAAGSFKL 110
>UniRef50_Q175E9 Cluster: Histone H1, putative; n=2; Aedes
aegypti|Rep: Histone H1, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 190
Score = 50.8 bits (116), Expect = 2e-05
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +3
Query: 18 KLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
KL+PFIRK LK +E GTLI+T G GASGSFKL
Sbjct: 87 KLSPFIRKALKAGIEKGTLIRTTGIGASGSFKL 119
>UniRef50_Q99282 Cluster: Histone H1.2, embryonic; n=7;
Coelomata|Rep: Histone H1.2, embryonic - Parechinus
angulosus (Angulate sea urchin)
Length = 62
Score = 50.4 bits (115), Expect = 2e-05
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +3
Query: 15 EKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+K + FI+K LK+ VE GTL+Q KGKGASGSFKL
Sbjct: 18 KKQSVFIKKALKSGVEKGTLVQVKGKGASGSFKL 51
>UniRef50_Q2F5R0 Cluster: Histone H1; n=1; Bombyx mori|Rep: Histone
H1 - Bombyx mori (Silk moth)
Length = 240
Score = 48.4 bits (110), Expect = 8e-05
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +3
Query: 3 KVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+VDA+K+ I+K +KN V G ++QTKG GA+GSFKL
Sbjct: 69 RVDADKINYLIKKQIKNGVIDGAIVQTKGVGATGSFKL 106
>UniRef50_P19375 Cluster: Histone H1, early embryonic; n=9;
Deuterostomia|Rep: Histone H1, early embryonic -
Strongylocentrotus purpuratus (Purple sea urchin)
Length = 205
Score = 46.8 bits (106), Expect = 3e-04
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +3
Query: 6 VDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
V ++ FI++ LK+ VE G L+QTKGKGASGSFK+
Sbjct: 53 VQMDRQLLFIKRALKSGVEKGKLVQTKGKGASGSFKV 89
>UniRef50_Q26072 Cluster: Sea urchin (P. miliaris) histones H4, H2B,
H3, H2A and H1 (in that order, containing many sequence
gaps); n=3; Psammechinus miliaris|Rep: Sea urchin (P.
miliaris) histones H4, H2B, H3, H2A and H1 (in that
order, containing many sequence gaps) - Psammechinus
miliaris (Sand sea urchin)
Length = 189
Score = 44.0 bits (99), Expect = 0.002
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +3
Query: 6 VDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
V+ ++ FI+K L++ V GTL+QTKG GASGS KL
Sbjct: 51 VEIDQQLVFIKKALRSGVAKGTLVQTKGTGASGSIKL 87
>UniRef50_P06894 Cluster: Histone H1A, sperm; n=3; Eumetazoa|Rep:
Histone H1A, sperm - Platynereis dumerilii (Dumeril's
clam worm)
Length = 121
Score = 43.6 bits (98), Expect = 0.002
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +3
Query: 3 KVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+VD +LAPFIRK+++ AV+ QTKG GASGSF++
Sbjct: 45 RVDVARLAPFIRKFIRKAVK-----QTKGTGASGSFRV 77
>UniRef50_P16401 Cluster: Histone H1.5; n=36; Eukaryota|Rep: Histone
H1.5 - Homo sapiens (Human)
Length = 226
Score = 43.6 bits (98), Expect = 0.002
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +3
Query: 9 DAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
D EK I+ LK+ V GTL+QTKG GASGSFKL
Sbjct: 75 DVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKL 110
>UniRef50_P16402 Cluster: Histone H1.3; n=169; Eukaryota|Rep:
Histone H1.3 - Homo sapiens (Human)
Length = 221
Score = 43.6 bits (98), Expect = 0.002
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +3
Query: 9 DAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
D EK I+ LK+ V GTL+QTKG GASGSFKL
Sbjct: 73 DVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKL 108
>UniRef50_P02256 Cluster: Histone H1, gonadal; n=24; cellular
organisms|Rep: Histone H1, gonadal - Parechinus
angulosus (Angulate sea urchin)
Length = 248
Score = 41.9 bits (94), Expect = 0.007
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +3
Query: 3 KVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+VD LAP +R+ L+N V SG L Q G GASG F++
Sbjct: 76 RVDMNVLAPHVRRALRNGVASGALKQVTGTGASGRFRV 113
>UniRef50_P15864 Cluster: Histone H1.2; n=20; Eumetazoa|Rep: Histone
H1.2 - Mus musculus (Mouse)
Length = 212
Score = 41.1 bits (92), Expect = 0.013
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +3
Query: 9 DAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
D EK I+ LK+ V G L+QTKG GASGSFKL
Sbjct: 72 DVEKNNSRIKLGLKSLVSKGILVQTKGTGASGSFKL 107
>UniRef50_Q16NP1 Cluster: Histone H1, putative; n=1; Aedes
aegypti|Rep: Histone H1, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 192
Score = 39.5 bits (88), Expect = 0.039
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 6 VDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKLE 119
VD K A +RK + VE+G +I+T+G G SG FK++
Sbjct: 91 VDTTKQASHVRKIMAKCVENGDIIRTRGVGCSGRFKVK 128
>UniRef50_UPI000065CCEB Cluster: Histone H1.0 (Histone H1(0))
(Histone H1').; n=1; Takifugu rubripes|Rep: Histone H1.0
(Histone H1(0)) (Histone H1'). - Takifugu rubripes
Length = 148
Score = 38.7 bits (86), Expect = 0.069
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +3
Query: 33 IRKYLKNAVESGTLIQTKGKGASGSFKL 116
I+ LK VESG L QTKG GASGSFKL
Sbjct: 66 IKLALKRLVESGMLRQTKGIGASGSFKL 93
>UniRef50_Q4SKP6 Cluster: Chromosome undetermined SCAF14565, whole
genome shotgun sequence; n=3; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14565,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 167
Score = 38.7 bits (86), Expect = 0.069
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 9 DAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
D +K ++ ++ V GTL+QTKG GASGSFK+
Sbjct: 61 DVDKNKARVKIAVRGLVSKGTLVQTKGTGASGSFKM 96
>UniRef50_UPI000066070C Cluster: Homolog of Gallus gallus "Histone
H1.11R.; n=2; Takifugu rubripes|Rep: Homolog of Gallus
gallus "Histone H1.11R. - Takifugu rubripes
Length = 219
Score = 37.9 bits (84), Expect = 0.12
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 9 DAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
D EK ++ ++ V GTL+QTKG GASGSF++
Sbjct: 3 DVEKNNARVKIAVRGLVTKGTLVQTKGTGASGSFRM 38
>UniRef50_Q5BY91 Cluster: SJCHGC01769 protein; n=8; Eumetazoa|Rep:
SJCHGC01769 protein - Schistosoma japonicum (Blood
fluke)
Length = 282
Score = 37.9 bits (84), Expect = 0.12
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +3
Query: 3 KVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
KVD ++ +R+ L V+SG ++ TKG GASGSFKL
Sbjct: 67 KVD-DRAESHLRRALVTGVKSGKIVHTKGIGASGSFKL 103
>UniRef50_Q0P452 Cluster: Zgc:153405; n=27; Euteleostomi|Rep:
Zgc:153405 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 202
Score = 37.1 bits (82), Expect = 0.21
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +3
Query: 9 DAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
D E+ ++ +K V +GTL+Q KG GASGSFKL
Sbjct: 61 DVERNNSRVKTAVKALVLNGTLVQPKGTGASGSFKL 96
>UniRef50_Q18336 Cluster: Histone H1.X; n=2; Caenorhabditis|Rep:
Histone H1.X - Caenorhabditis elegans
Length = 232
Score = 37.1 bits (82), Expect = 0.21
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +3
Query: 18 KLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
K+ +R LK AV+SG + QT+G GA+GSF++
Sbjct: 78 KVNNHLRSVLKKAVDSGDIEQTRGHGATGSFRM 110
>UniRef50_UPI0000E81065 Cluster: PREDICTED: similar to Cyclin F;
n=4; Gallus gallus|Rep: PREDICTED: similar to Cyclin F -
Gallus gallus
Length = 174
Score = 36.3 bits (80), Expect = 0.37
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = -3
Query: 252 CCCCRL*TLPKRKRTKRCP-LLPLRN 178
CCCCR + P ++RT+R P +LPLR+
Sbjct: 8 CCCCRCFSFPSKRRTRRRPGVLPLRS 33
>UniRef50_P06895 Cluster: Histone H1B, sperm; n=1; Platynereis
dumerilii|Rep: Histone H1B, sperm - Platynereis
dumerilii (Dumeril's clam worm)
Length = 119
Score = 36.3 bits (80), Expect = 0.37
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 6 VDAEKLAPFIRKYLKNAVESGTLIQTKG 89
VD +L PFIR++++ AV G L+Q KG
Sbjct: 44 VDVARLGPFIRRFVRKAVAEGMLVQNKG 71
>UniRef50_UPI00003614D0 Cluster: Histone H1.1.; n=1; Takifugu
rubripes|Rep: Histone H1.1. - Takifugu rubripes
Length = 203
Score = 34.7 bits (76), Expect = 1.1
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +3
Query: 6 VDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
VD K I L V +G+++Q KG GASGSFKL
Sbjct: 64 VDLLKANKRINLTLARLVSNGSVVQVKGTGASGSFKL 100
>UniRef50_Q4T9L9 Cluster: Chromosome undetermined SCAF7535, whole
genome shotgun sequence; n=2; cellular organisms|Rep:
Chromosome undetermined SCAF7535, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 887
Score = 34.7 bits (76), Expect = 1.1
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 6 VDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
++ EK ++K +K +E GT+ Q KGKG SG+F +
Sbjct: 101 MEIEKKKFLLKKAMKKHLEKGTIKQLKGKGLSGTFAI 137
>UniRef50_P07305 Cluster: Histone H1.0 (Histone H1(0)); n=26;
Eumetazoa|Rep: Histone H1.0 (Histone H1(0)) - Homo
sapiens (Human)
Length = 194
Score = 33.9 bits (74), Expect = 2.0
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 33 IRKYLKNAVESGTLIQTKGKGASGSFKL 116
I+ +K V +G L QTKG GASGSF+L
Sbjct: 68 IKLSIKRLVTTGVLKQTKGVGASGSFRL 95
>UniRef50_UPI0000F1F493 Cluster: PREDICTED: hypothetical protein;
n=7; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 550
Score = 33.5 bits (73), Expect = 2.6
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 3 KVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKLE 119
+++ E ++ L+ +VE G L Q GKGASG+F+L+
Sbjct: 260 QLNVENRPDILKNCLQRSVEKGYLEQITGKGASGTFQLK 298
>UniRef50_Q4SXC9 Cluster: Chromosome undetermined SCAF12481, whole
genome shotgun sequence; n=2; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF12481,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 231
Score = 33.5 bits (73), Expect = 2.6
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 9 DAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
D +K +R +K+ V+ G L+QT+G GAS ++K+
Sbjct: 4 DVKKNQDQVRVAIKSLVKKGVLVQTRGFGASAAYKI 39
>UniRef50_O17536 Cluster: Histone H1.4; n=6; Caenorhabditis|Rep:
Histone H1.4 - Caenorhabditis elegans
Length = 253
Score = 33.5 bits (73), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 12 AEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
A K+ +RK L +ES +Q G GA+G F+L
Sbjct: 91 ANKINAHLRKALNKGLESNAFVQASGNGANGRFRL 125
>UniRef50_A6NI71 Cluster: Uncharacterized protein HP1BP3; n=43;
Tetrapoda|Rep: Uncharacterized protein HP1BP3 - Homo
sapiens (Human)
Length = 555
Score = 33.1 bits (72), Expect = 3.4
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 33 IRKYLKNAVESGTLIQTKGKGASGSFKLE 119
++ L+ AVE G L Q GKGASG+F+L+
Sbjct: 303 LKNALQRAVERGQLEQITGKGASGTFQLK 331
Score = 32.7 bits (71), Expect = 4.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 6 VDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSF 110
++ E+ +++ LK + G + Q KGKGASGSF
Sbjct: 196 LELERRGYLLKQALKRELNRGVIKQVKGKGASGSF 230
>UniRef50_Q4TWL1 Cluster: Histone H1-like; n=1; Caenorhabditis
remanei|Rep: Histone H1-like - Caenorhabditis remanei
Length = 198
Score = 32.7 bits (71), Expect = 4.5
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3
Query: 45 LKNAVESGTLIQTKGKGASGSFKL 116
LK V SG L+Q G GASG FKL
Sbjct: 112 LKKGVASGALLQVTGTGASGRFKL 135
>UniRef50_P15870 Cluster: Histone H1-delta; n=3; Deuterostomia|Rep:
Histone H1-delta - Strongylocentrotus purpuratus (Purple
sea urchin)
Length = 185
Score = 32.3 bits (70), Expect = 6.0
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +3
Query: 33 IRKYLKNAVESGTLIQTKGKGASGSFKL 116
I++ LK V SG L KG GASGSF L
Sbjct: 76 IKQALKRGVTSGQLRHVKGSGASGSFLL 103
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,837,008
Number of Sequences: 1657284
Number of extensions: 3258453
Number of successful extensions: 8804
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 8676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8802
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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