Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30834
(488 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) 40 0.001
SB_48636| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_41055| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 39 0.003
SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_12695| Best HMM Match : Linker_histone (HMM E-Value=1.6e-38) 38 0.006
SB_44588| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_41056| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.008
SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39) 37 0.008
SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.010
SB_58714| Best HMM Match : Linker_histone (HMM E-Value=5.7e-15) 33 0.096
SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 33 0.096
SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37) 33 0.096
SB_25699| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 33 0.096
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.096
SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37) 33 0.096
SB_17373| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_35969| Best HMM Match : B56 (HMM E-Value=3.1) 33 0.17
SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38) 32 0.29
SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30) 31 0.67
SB_52757| Best HMM Match : BolA (HMM E-Value=4.8) 28 4.7
SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088) 28 4.7
SB_41054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
Length = 650
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 15 EKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
E + ++ LK AV G+++QTKG GASGSFKL
Sbjct: 519 ESVGVHLKMALKRAVAGGSILQTKGVGASGSFKL 552
>SB_48636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 15 EKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+K++ ++ LK E GTL+ TKG GASGSFKL
Sbjct: 52 DKVSTQLKMALKRMSEKGTLVHTKGTGASGSFKL 85
>SB_41055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 30 FIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+++ LK E GTL+ TKG GASGSFKL
Sbjct: 94 YLKLALKRMSEKGTLVHTKGTGASGSFKL 122
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +3
Query: 9 DAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
++EKL ++ LK V+SG L++T G+GASGSFKL
Sbjct: 52 NSEKL---VKASLKKGVDSGRLVRTSGQGASGSFKL 84
>SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3
Query: 33 IRKYLKNAVESGTLIQTKGKGASGSFKL 116
++ LK V +G L+Q KGKGASGSFKL
Sbjct: 88 LKMALKRGVAAGRLVQPKGKGASGSFKL 115
>SB_12695| Best HMM Match : Linker_histone (HMM E-Value=1.6e-38)
Length = 184
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 15 EKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+K+ ++ LK E G L+ TKG GASGSFKL
Sbjct: 54 DKVGAQLKMALKRMSEKGALVHTKGTGASGSFKL 87
>SB_44588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 15 EKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+K+ ++ LK E G L+ TKG GASGSFKL
Sbjct: 54 DKVGTQLKMALKRMSEKGALVHTKGTGASGSFKL 87
>SB_41056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 30 FIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+++ LK + GTL+ TKG GASGSFKL
Sbjct: 94 YLKLALKRMSKKGTLVHTKGTGASGSFKL 122
>SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39)
Length = 370
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 30 FIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+++ LK + GTL+ TKG GASGSFKL
Sbjct: 254 YLKLALKRMSKKGTLVHTKGTGASGSFKL 282
>SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 30 FIRKYLKNAVESGTLIQTKGKGASGSFKL 116
+++ LK E GTL+ TKG GA GSFKL
Sbjct: 180 YLKLALKRMSEKGTLVHTKGTGACGSFKL 208
>SB_58714| Best HMM Match : Linker_histone (HMM E-Value=5.7e-15)
Length = 169
Score = 33.5 bits (73), Expect = 0.096
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 33 IRKYLKNA-VESGTLIQTKGKGASGSFKLE 119
+ + LK A GTL+ KGKGA+GSFKL+
Sbjct: 54 LNQALKRASAPEGTLVHNKGKGAAGSFKLK 83
>SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 184
Score = 33.5 bits (73), Expect = 0.096
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 45 LKNAVESGTLIQTKGKGASGSFKL 116
LK + G L+ TKG GASGSFKL
Sbjct: 66 LKRMSDKGKLVHTKGVGASGSFKL 89
>SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)
Length = 184
Score = 33.5 bits (73), Expect = 0.096
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 45 LKNAVESGTLIQTKGKGASGSFKL 116
LK + G L+ TKG GASGSFKL
Sbjct: 66 LKRMSDKGKLVHTKGVGASGSFKL 89
>SB_25699| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 179
Score = 33.5 bits (73), Expect = 0.096
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 45 LKNAVESGTLIQTKGKGASGSFKL 116
LK + G L+ TKG GASGSFKL
Sbjct: 66 LKRMSDKGKLVHTKGVGASGSFKL 89
>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 33.5 bits (73), Expect = 0.096
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 33 IRKYLKNAVESGTLIQTKGKGASGSFKL 116
++ LK +G+LI TKG GASGSFKL
Sbjct: 60 VKLALKRMSLAGSLIHTKGVGASGSFKL 87
>SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37)
Length = 184
Score = 33.5 bits (73), Expect = 0.096
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 45 LKNAVESGTLIQTKGKGASGSFKL 116
LK + G L+ TKG GASGSFKL
Sbjct: 66 LKRMSDKGKLVHTKGVGASGSFKL 89
>SB_17373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3
Query: 45 LKNAVESGTLIQTKGKGASGSFKL 116
LK G L+ TKG GASGSFKL
Sbjct: 127 LKRMSAKGALVHTKGTGASGSFKL 150
>SB_35969| Best HMM Match : B56 (HMM E-Value=3.1)
Length = 174
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 45 LKNA-VESGTLIQTKGKGASGSFKL 116
LK A GTL+ KGKGA+GSFKL
Sbjct: 2 LKRASAPEGTLVHNKGKGAAGSFKL 26
>SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)
Length = 234
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3
Query: 45 LKNAVESGTLIQTKGKGASGSFKL 116
LK + G L TKG GASGSFKL
Sbjct: 113 LKRMSDKGKLAHTKGVGASGSFKL 136
>SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30)
Length = 279
Score = 30.7 bits (66), Expect = 0.67
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 45 LKNAVESGTLIQTKGKGASGSFKLE 119
LK + G L+ TK GASGSFKL+
Sbjct: 161 LKRMSDKGKLVHTKVVGASGSFKLD 185
>SB_52757| Best HMM Match : BolA (HMM E-Value=4.8)
Length = 127
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 222 KRKRTKRCPLLPLRNCHRTHHQIRNRVSSK 133
K+K+TK C L +N +R HH RN SK
Sbjct: 88 KKKQTKGCAL---KNYYRCHHHTRNWSPSK 114
>SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088)
Length = 921
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 222 KRKRTKRCPLLPLRNCHRTHHQIRNRVSSK 133
K+K+TK C L +N +R HH RN SK
Sbjct: 178 KKKQTKGCAL---KNYYRCHHNTRNWSPSK 204
>SB_41054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 30 FIRKYLKNAVESGTLIQT-KGKGASGSFKL 116
+++ LK GTL + KG GASGSFKL
Sbjct: 56 YLKLALKRMSGKGTLSKLEKGTGASGSFKL 85
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,349,576
Number of Sequences: 59808
Number of extensions: 111462
Number of successful extensions: 362
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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