Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30834
(488 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical pr... 37 0.007
AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-li... 37 0.007
AF068708-3|AAC17754.1| 253|Caenorhabditis elegans Histone h1 li... 33 0.084
AF026521-1|AAB82588.1| 253|Caenorhabditis elegans histone H1.4 ... 33 0.084
AF005371-1|AAB81029.1| 253|Caenorhabditis elegans histone H1.4 ... 33 0.084
AF005372-1|AAB81030.1| 225|Caenorhabditis elegans histone H1.5 ... 31 0.59
AF003145-1|AAB57720.1| 225|Caenorhabditis elegans Histone h1 li... 31 0.59
X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1 prot... 29 1.4
Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1 ... 29 1.8
AF017812-1|AAB70559.1| 191|Caenorhabditis elegans histone H1.2 ... 28 4.2
AF017811-1|AAB70666.1| 191|Caenorhabditis elegans histone H1.2 ... 28 4.2
AC084197-2|AAM44399.1| 241|Caenorhabditis elegans Histone h1 li... 28 4.2
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 27 7.3
AL117206-6|CAB60450.1| 734|Caenorhabditis elegans Hypothetical ... 27 7.3
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 27 7.3
>Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical
protein C30G7.1 protein.
Length = 232
Score = 37.1 bits (82), Expect = 0.007
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +3
Query: 18 KLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
K+ +R LK AV+SG + QT+G GA+GSF++
Sbjct: 78 KVNNHLRSVLKKAVDSGDIEQTRGHGATGSFRM 110
>AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-like
protein protein.
Length = 232
Score = 37.1 bits (82), Expect = 0.007
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +3
Query: 18 KLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
K+ +R LK AV+SG + QT+G GA+GSF++
Sbjct: 78 KVNNHLRSVLKKAVDSGDIEQTRGHGATGSFRM 110
>AF068708-3|AAC17754.1| 253|Caenorhabditis elegans Histone h1 like
protein 4 protein.
Length = 253
Score = 33.5 bits (73), Expect = 0.084
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 12 AEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
A K+ +RK L +ES +Q G GA+G F+L
Sbjct: 91 ANKINAHLRKALNKGLESNAFVQASGNGANGRFRL 125
>AF026521-1|AAB82588.1| 253|Caenorhabditis elegans histone H1.4
protein.
Length = 253
Score = 33.5 bits (73), Expect = 0.084
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 12 AEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
A K+ +RK L +ES +Q G GA+G F+L
Sbjct: 91 ANKINAHLRKALNKGLESNAFVQASGNGANGRFRL 125
>AF005371-1|AAB81029.1| 253|Caenorhabditis elegans histone H1.4
protein.
Length = 253
Score = 33.5 bits (73), Expect = 0.084
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 12 AEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
A K+ +RK L +ES +Q G GA+G F+L
Sbjct: 91 ANKINAHLRKALNKGLESNAFVQASGNGANGRFRL 125
>AF005372-1|AAB81030.1| 225|Caenorhabditis elegans histone H1.5
protein.
Length = 225
Score = 30.7 bits (66), Expect = 0.59
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 33 IRKYLKNAVESGTLIQTKGKGASGSFKL 116
+R LK V S L+QT G GA+G F+L
Sbjct: 84 LRSALKKGVVSKVLVQTNGIGANGRFRL 111
>AF003145-1|AAB57720.1| 225|Caenorhabditis elegans Histone h1 like
protein 5 protein.
Length = 225
Score = 30.7 bits (66), Expect = 0.59
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 33 IRKYLKNAVESGTLIQTKGKGASGSFKL 116
+R LK V S L+QT G GA+G F+L
Sbjct: 84 LRSALKKGVVSKVLVQTNGIGANGRFRL 111
>X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1
protein.
Length = 208
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 36 RKYLKNAVESGTLIQTKGKGASGSFKL 116
R+ LK V S L+Q +G GA+G F++
Sbjct: 85 RQALKRGVTSKALVQARGSGANGRFRV 111
>Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical
protein M163.3 protein.
Length = 208
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 33 IRKYLKNAVESGTLIQTKGKGASGSFKL 116
+R+ LK V S L+Q G GA+G F++
Sbjct: 84 LRQALKRGVTSKALVQAAGSGANGRFRV 111
>AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1
protein.
Length = 208
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 33 IRKYLKNAVESGTLIQTKGKGASGSFKL 116
+R+ LK V S L+Q G GA+G F++
Sbjct: 84 LRQALKRGVTSKALVQAAGSGANGRFRV 111
>AF017812-1|AAB70559.1| 191|Caenorhabditis elegans histone H1.2
protein.
Length = 191
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 18 KLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
K+ +R L V S L+Q+ G GASG F++
Sbjct: 79 KINSRLRAALNKGVASKALVQSVGNGASGRFRV 111
>AF017811-1|AAB70666.1| 191|Caenorhabditis elegans histone H1.2
protein.
Length = 191
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 18 KLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
K+ +R L V S L+Q+ G GASG F++
Sbjct: 79 KINSRLRAALNKGVASKALVQSVGNGASGRFRV 111
>AC084197-2|AAM44399.1| 241|Caenorhabditis elegans Histone h1 like
protein 2, isoforma protein.
Length = 241
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 18 KLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
K+ +R L V S L+Q+ G GASG F++
Sbjct: 129 KINSRLRAALNKGVASKALVQSVGNGASGRFRV 161
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 18 KLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
K+ +R L V S L+Q+ G GASG F++
Sbjct: 79 KINARLRDTLNKGVVSKALVQSVGTGASGRFRV 111
>AL117206-6|CAB60450.1| 734|Caenorhabditis elegans Hypothetical
protein Y67A10A.9 protein.
Length = 734
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 3 KVDAEKLAPFIRKYLKNAVESGTLIQTKGKGAS 101
+VD+ L + + YLKNA+E G + Q + AS
Sbjct: 278 RVDSSALRQWEKSYLKNAMEKGDVEQNFKRTAS 310
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 18 KLAPFIRKYLKNAVESGTLIQTKGKGASGSFKL 116
K+ +R L V S L+Q+ G GASG F++
Sbjct: 79 KINARLRDTLNKGVVSKALVQSVGTGASGRFRV 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,059,784
Number of Sequences: 27780
Number of extensions: 79179
Number of successful extensions: 244
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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