Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30832
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    88   1e-18
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    27   2.0  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   2.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   4.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   6.1  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   8.0  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   8.0  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 48/79 (60%), Positives = 53/79 (67%)
 Frame = +3

Query: 408 GTIAKSGTKAFMEGLQAGADISMIGQFGVWLLLHYLVADRVTVHSKHHDDEQYVWESFCR 587
           G IAKSGTK FME   +GADISMIGQFGV     YLVAD+V V SKH+DDEQY+WES   
Sbjct: 95  GVIAKSGTKQFMEAAASGADISMIGQFGVGFYSAYLVADKVQVVSKHNDDEQYIWES-SA 153

Query: 588 EARFTVPPRQAVKPPLVRG 644
              FTV       P L+RG
Sbjct: 154 GGSFTV-TLDTDGPRLLRG 171



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 45/94 (47%), Positives = 54/94 (57%)
 Frame = +2

Query: 128 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALAKSGMNLSRIRQNSIVAK 307
           +  ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDAL K               K
Sbjct: 2   SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEK 61

Query: 308 SCTSRSFPTRTRALLRSSIPGLV*PRADFVNNLG 409
               R  P +   +L     G+   + D +NNLG
Sbjct: 62  DLFIRITPDKENKILSIRDTGIGMTKNDLINNLG 95


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 396 TKSALGHTNPGIDDRKSALVLVGNDLDVQLFAT 298
           +KSA+    PG+  R S +V + ND+DV +  T
Sbjct: 173 SKSAIVGNYPGVTKRISEIVRLFNDMDVYMLDT 205


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 276 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRDWYDQG 386
           H S K    +R+   D +  +ER H+  +R+RD YD G
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSG 230


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +2

Query: 197 YSNKEIFLRELISNSSDALAKSGMNLSRIRQNSIVAKSCTSRSFPTRTRALLRSSIPG 370
           YS  +  L  +ISN+  A +KSG+N      ++++A   +S +F   T  L RSSI G
Sbjct: 387 YSVVQSSLASIISNAYIATSKSGLNSG---VSTLLASPTSSSTFV--TSLLRRSSIDG 439


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 381 GHTNPGIDDRKSALVLVGNDLDVQL 307
           G   P +DDR+  L+ + NDL+V L
Sbjct: 13  GQVVPNLDDREYRLIKLENDLEVLL 37


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = -2

Query: 458  CLKTLHESFSTRFRDGSPNCS---QNRPLVIPIPVSMIVRVPSFLLGMILMYSSLPLSSF 288
            C++T        + DG  N     Q   L+I       +    FL   + + S   L +F
Sbjct: 1841 CIETFILKMKKEWYDGLRNIRFGIQRPNLLIYDEDKKFINTEHFLGSKVNLNSVTSLGNF 1900

Query: 287  DGSVRDSYLILLK 249
            +GS  +S+L LLK
Sbjct: 1901 NGSSPNSFLFLLK 1913


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 214 FPS*ADFQFIG-RFSKIRYESLTDPSKLDSGKE-LYIKII 327
           F + A   FI  R+ K  YESL DP    S K+ LY+ ++
Sbjct: 418 FQASASRDFISDRYYKSLYESLLDPRLTTSSKQSLYLNLL 457


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 329 GMILMYSSLPLSSFDGSVRDSYLILLKRPMNWKSAHE 219
           G++     +PL +F GS R  +++    P +WK+  +
Sbjct: 132 GLVYSQDGVPLQAFSGSERTDFIL----PDSWKTTED 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,113
Number of Sequences: 5004
Number of extensions: 68688
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)