Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30832
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0042 + 473912-474058,474208-474349,474442-476264 92 5e-19
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 91 1e-18
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 91 1e-18
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 91 1e-18
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 80 1e-15
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 63 2e-10
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 60 1e-09
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 59 4e-09
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 28 6.3
08_02_1180 + 24980042-24980784,24980874-24981168,24981650-249818... 28 8.4
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 91.9 bits (218), Expect = 5e-19
Identities = 42/57 (73%), Positives = 48/57 (84%)
Frame = +3
Query: 408 GTIAKSGTKAFMEGLQAGADISMIGQFGVWLLLHYLVADRVTVHSKHHDDEQYVWES 578
GTIA+SGTK FME LQAGAD+SMIGQFGV YLVA++V V +KH+DDEQYVWES
Sbjct: 103 GTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYVWES 159
Score = 86.2 bits (204), Expect = 2e-17
Identities = 51/98 (52%), Positives = 58/98 (59%)
Frame = +2
Query: 116 ETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALAKSGMNLSRIRQNS 295
+ Q AE ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDAL K +
Sbjct: 6 DVQMAEKETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL 65
Query: 296 IVAKSCTSRSFPTRTRALLRSSIPGLV*PRADFVNNLG 409
R P + L G+ ++D VNNLG
Sbjct: 66 DAQPELFIRLVPYKPSKTLSIIDSGVGMTKSDLVNNLG 103
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = +1
Query: 256 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGRFCEQFGEPSRN 423
KIR+ESLTD SKLD+ EL+I+++P K TL+IID+G+GMTK G +R+
Sbjct: 53 KIRFESLTDKSKLDAQPELFIRLVPYKPSKTLSIIDSGVGMTKSDLVNNLGTIARS 108
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/57 (73%), Positives = 47/57 (82%)
Frame = +3
Query: 408 GTIAKSGTKAFMEGLQAGADISMIGQFGVWLLLHYLVADRVTVHSKHHDDEQYVWES 578
GTIA+SGTK FME L AGAD+SMIGQFGV YLVA+RV V +KH+DDEQYVWES
Sbjct: 96 GTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWES 152
Score = 82.2 bits (194), Expect = 4e-16
Identities = 48/94 (51%), Positives = 55/94 (58%)
Frame = +2
Query: 128 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALAKSGMNLSRIRQNSIVAK 307
+E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDAL K +
Sbjct: 3 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQP 62
Query: 308 SCTSRSFPTRTRALLRSSIPGLV*PRADFVNNLG 409
P + L G+ ++D VNNLG
Sbjct: 63 ELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLG 96
Score = 64.9 bits (151), Expect = 6e-11
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +1
Query: 256 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGRFCEQFGEPSRN 423
KIR+ESLTD SKLD+ EL+I I+P+K TL+IID+G+GMTK G +R+
Sbjct: 46 KIRFESLTDKSKLDAQPELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLGTIARS 101
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/57 (73%), Positives = 47/57 (82%)
Frame = +3
Query: 408 GTIAKSGTKAFMEGLQAGADISMIGQFGVWLLLHYLVADRVTVHSKHHDDEQYVWES 578
GTIA+SGTK FME L AGAD+SMIGQFGV YLVA+RV V +KH+DDEQYVWES
Sbjct: 96 GTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWES 152
Score = 82.2 bits (194), Expect = 4e-16
Identities = 48/94 (51%), Positives = 55/94 (58%)
Frame = +2
Query: 128 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALAKSGMNLSRIRQNSIVAK 307
+E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDAL K +
Sbjct: 3 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQP 62
Query: 308 SCTSRSFPTRTRALLRSSIPGLV*PRADFVNNLG 409
P + L G+ ++D VNNLG
Sbjct: 63 ELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLG 96
Score = 64.9 bits (151), Expect = 6e-11
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +1
Query: 256 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGRFCEQFGEPSRN 423
KIR+ESLTD SKLD+ EL+I I+P+K TL+IID+G+GMTK G +R+
Sbjct: 46 KIRFESLTDKSKLDAQPELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLGTIARS 101
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/57 (73%), Positives = 47/57 (82%)
Frame = +3
Query: 408 GTIAKSGTKAFMEGLQAGADISMIGQFGVWLLLHYLVADRVTVHSKHHDDEQYVWES 578
GTIA+SGTK FME L AGAD+SMIGQFGV YLVA+RV V +KH+DDEQYVWES
Sbjct: 96 GTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWES 152
Score = 82.6 bits (195), Expect = 3e-16
Identities = 48/94 (51%), Positives = 55/94 (58%)
Frame = +2
Query: 128 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALAKSGMNLSRIRQNSIVAK 307
+E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDAL K +
Sbjct: 3 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQP 62
Query: 308 SCTSRSFPTRTRALLRSSIPGLV*PRADFVNNLG 409
P + L G+ ++D VNNLG
Sbjct: 63 ELFIHIVPDKASNTLSIIDSGIGMTKSDLVNNLG 96
Score = 65.3 bits (152), Expect = 5e-11
Identities = 31/56 (55%), Positives = 40/56 (71%)
Frame = +1
Query: 256 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGRFCEQFGEPSRN 423
KIR+ESLTD SKLD+ EL+I I+P+K TL+IID+GIGMTK G +R+
Sbjct: 46 KIRFESLTDKSKLDAQPELFIHIVPDKASNTLSIIDSGIGMTKSDLVNNLGTIARS 101
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/57 (64%), Positives = 45/57 (78%)
Frame = +3
Query: 408 GTIAKSGTKAFMEGLQAGADISMIGQFGVWLLLHYLVADRVTVHSKHHDDEQYVWES 578
GTIAKSGT AF+E +Q G D+++IGQFGV YLVAD V V SKH+DD+Q+VWES
Sbjct: 197 GTIAKSGTSAFVEKMQTGGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQHVWES 253
Score = 64.9 bits (151), Expect = 6e-11
Identities = 30/48 (62%), Positives = 39/48 (81%)
Frame = +2
Query: 116 ETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALAK 259
+T + E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDAL K
Sbjct: 98 KTLRSSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDK 145
Score = 34.7 bits (76), Expect = 0.073
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 256 KIRYESLTDPSKLDSGK--ELYIKIIPNKNEGTLTIIDTGIGMTKGRFCEQFG 408
KIR+ +LTD L G +L I+I +K + L+I D GIGMTK + G
Sbjct: 145 KIRFLALTDKEVLGEGDTAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLG 197
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/50 (56%), Positives = 40/50 (80%)
Frame = +2
Query: 110 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALAK 259
E + AE E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDAL K
Sbjct: 333 EKAEETAEEEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDK 382
Score = 58.8 bits (136), Expect = 4e-09
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Frame = +3
Query: 408 GTIAKSGTKAFMEGLQA----GADISMIGQFGVWLLLHYLVADRVTVHSKH-HDDEQYVW 572
GTIA+SGT F++ L+ GAD +IGQFGV +LVA++V V +K D+QYVW
Sbjct: 432 GTIAQSGTSKFLKALKENKDLGADNGLIGQFGVGFYSAFLVAEKVVVSTKSPKSDKQYVW 491
Query: 573 ESFCREARFTVPPRQAVKPPLVRG 644
E + + + + L RG
Sbjct: 492 EGVADSSSYVIKEETDPEKMLTRG 515
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/51 (49%), Positives = 33/51 (64%)
Frame = +1
Query: 256 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGRFCEQFG 408
K+R+ +TD S L G EL I+I P+ + GT+TI DTGIGMTK + G
Sbjct: 382 KLRFLGVTDSSLLADGGELEIRIKPDPDAGTITITDTGIGMTKDELKDCLG 432
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +3
Query: 408 GTIAKSGTKAFMEGL----QAGADISMIGQFGVWLLLHYLVADRVTVHSKH-HDDEQYVW 572
GTIA SGT F++ L +AG D ++IGQFGV +LV+D+V V +K D+QYVW
Sbjct: 443 GTIASSGTAKFLKALKESQEAGVDSNLIGQFGVGFYSAFLVSDKVAVSTKSPKSDKQYVW 502
Query: 573 ESFCREARFTVPPRQAVKPPLVRG 644
E + +T+ + L RG
Sbjct: 503 EGEAESSSYTIREETDPEKLLPRG 526
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2
Query: 107 EEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALAK 259
+ +T P VE +QAE+ +LM LI+++ YSNKE+FLREL+SN+SDAL K
Sbjct: 345 DSSDTPP--VEKHEYQAEVNRLMDLIVHSLYSNKEVFLRELVSNASDALDK 393
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/85 (34%), Positives = 46/85 (54%)
Frame = +1
Query: 256 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGRFCEQFGEPSRNLVLK 435
K+RY S+TDP + G L I+I +K G +TI DTGIGMT+ + G + + K
Sbjct: 393 KLRYLSVTDPDLIKDGAGLDIRIQTDKENGIITITDTGIGMTRQELVDSLGTIASSGTAK 452
Query: 436 LSWRVFKQVPTSA*LDSSVFGFYSI 510
+ K+ A +DS++ G + +
Sbjct: 453 F-LKALKE-SQEAGVDSNLIGQFGV 475
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 58.8 bits (136), Expect = 4e-09
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +3
Query: 408 GTIAKSGTKAFMEGLQA----GADISMIGQFGVWLLLHYLVADRVTVHSKH-HDDEQYVW 572
GTIA+SGT F++ L+ GAD +IGQFGV +LVA++V V +K D+QYVW
Sbjct: 182 GTIAQSGTSKFLKALKENKDLGADNGLIGQFGVGFYSAFLVAEKVVVSTKSPKADKQYVW 241
Query: 573 ESFCREARFTVPPRQAVKPPLVRG 644
E+ + + + + L RG
Sbjct: 242 EAMADSSSYVIKEETDPEKMLTRG 265
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/46 (54%), Positives = 38/46 (82%)
Frame = +2
Query: 122 QPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALAK 259
+ A E F +QAE+++L+ LI+++ YS+KE+FLREL+SN+SDAL K
Sbjct: 78 EEAAGEQFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDK 123
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Frame = +1
Query: 256 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTII---------DTGIGMTKGRFCEQFG 408
K+R+ S+TD S L G EL I+I P+ GT+TI DTGIGMTK + G
Sbjct: 123 KLRFLSVTDSSVLSDGGELEIRIKPDPEAGTITITRSHCFASYSDTGIGMTKDELKDCLG 182
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 663 KDQIFCTLGPKGAS 622
KDQ+FC LGP GA+
Sbjct: 558 KDQLFCLLGPNGAA 571
>08_02_1180 +
24980042-24980784,24980874-24981168,24981650-24981823,
24981999-24982187,24982290-24982403,24982517-24982837,
24983485-24983542,24984216-24984337
Length = 671
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 191 TFYSNKEIFLRELISNSSDALAKSGMNLSRIRQNSIVAKSCTSRSFP 331
TF+ + + LRE+I+ + +S ++ I N AKS RS P
Sbjct: 250 TFWLSNTVVLREIIAQTIGISCQSSSTITAINMNG-SAKSLDGRSMP 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,726,590
Number of Sequences: 37544
Number of extensions: 476865
Number of successful extensions: 1164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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