Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30832
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 68 7e-12
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 61 1e-09
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 48 7e-06
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_27239| Best HMM Match : Ion_trans (HMM E-Value=3.8e-39) 31 1.2
SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 8.5
SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2) 28 8.5
SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 8.5
SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 8.5
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 68.1 bits (159), Expect = 7e-12
Identities = 37/66 (56%), Positives = 45/66 (68%)
Frame = +3
Query: 453 QAGADISMIGQFGVWLLLHYLVADRVTVHSKHHDDEQYVWESFCREARFTVPPRQAVKPP 632
+AGADISMIGQFGV YLVA++V V +KH+DDEQY+WES FTV ++ P
Sbjct: 59 KAGADISMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWES-AAGGSFTV--KRDSGEP 115
Query: 633 LVRGYK 650
L RG K
Sbjct: 116 LGRGTK 121
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 60.9 bits (141), Expect = 1e-09
Identities = 30/50 (60%), Positives = 37/50 (74%)
Frame = +2
Query: 110 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALAK 259
+M+ + E FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDAL K
Sbjct: 68 QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDK 117
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/51 (50%), Positives = 30/51 (58%)
Frame = +1
Query: 256 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGRFCEQFG 408
KIR SLTD + DSG EL IKI +K L + DTGIGMTK + G
Sbjct: 117 KIRLMSLTDKTAFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNLG 167
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = +3
Query: 516 VADRVTVHSKHHDDEQYVWESFCREARFTVPPRQAVKPPLVRG 644
+ADRV V SK++DD+QY+WES + PR P L RG
Sbjct: 175 IADRVIVTSKNNDDKQYIWESDASSFSISEDPR---GPTLKRG 214
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 48.0 bits (109), Expect = 7e-06
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Frame = +3
Query: 408 GTIAKSGTKAFMEGLQAGADIS---MIGQFGVWLLLHYLVADRVTVHSKHH--DDEQYVW 572
G IAKSG+K FME L+ A S +IGQFGV ++VAD+V V++K + + + Y W
Sbjct: 150 GVIAKSGSKVFMEKLKNEARSSHENIIGQFGVGFYSTFMVADKVDVYTKSYQPNSQGYFW 209
Query: 573 ES 578
S
Sbjct: 210 TS 211
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 256 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGRFCEQFG 408
K+R+ LT ++ L I I ++ GT TI D G+GMT+ + G
Sbjct: 100 KVRHFFLTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLG 150
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +2
Query: 89 AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALAK 259
+V+ + E + + E + ++ + + L++++ + ++F+RE+ISN+SDAL K
Sbjct: 43 SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEK 100
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 31.5 bits (68), Expect = 0.69
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 244 GRFSKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGRFCEQFG-EPSR 420
G+F + RY+ D + D G +L + ++ G T ID G M GR G E SR
Sbjct: 112 GKFGRPRYDERYDLERFDRGPDLRKEWDMDRGRGRETDIDRGSRMASGRGVRGRGDERSR 171
Query: 421 NLVL 432
++ L
Sbjct: 172 SMDL 175
>SB_27239| Best HMM Match : Ion_trans (HMM E-Value=3.8e-39)
Length = 307
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -2
Query: 425 RFRDGSPNCSQNRPLVIPIPVSM--IVRVPSFLLGMILMYSSLPLSSFDGSVR 273
R G P C NR L++ I +SM + + + L ++ +Y+ + +SSF G+++
Sbjct: 111 RVTKGGPVCQANRQLLVAIIISMPALFNIGTLLFLVMFIYAIIGMSSF-GNIK 162
>SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -2
Query: 596 TSLPAEGFPHVLLVVMVFRVNSHAVSDQVME*KPNTELSNHADVGTCL-KTLHESFSTRF 420
T+L + P VL + ++ HA S V+E + +S HA G L +TL + S
Sbjct: 297 TALRLQATPEVLEETLRSAISQHARSGLVLEETLRSAISQHARSGLVLEETLRSAISQHT 356
Query: 419 RDG 411
R G
Sbjct: 357 RSG 359
>SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 280 DPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGRFCEQFGEPSRNLVLKLSWRV 450
+P K+++G K + + DT T RFC +PS NLV+ W +
Sbjct: 2 EPGKMENGGRWMSVSSIEKGKAKIEAYDT---TTTSRFCSVRNDPSDNLVMDKDWYI 55
>SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 289
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 151 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 29
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 151 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 29
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 151 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 29
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 479 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 517
>SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)
Length = 306
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 151 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 29
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 412
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 151 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 29
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
>SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 246
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 151 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 29
ERE +L W C HF + L L HK LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,532,644
Number of Sequences: 59808
Number of extensions: 531243
Number of successful extensions: 1646
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -