Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30831
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    28   1.2  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    28   1.6  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   3.6  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   4.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   4.8  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        26   6.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   6.3  
SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  

>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 420 VCYAIGLSTVPYVTIGEMFPTNVKLYAFLQAHIYTGVAMFAVQNLFRVVEQAYRIYTV 593
           +C  +G    PY+      PT  KL A    H Y GV   A+ +L+R     Y++  V
Sbjct: 666 ICMYVGAPFTPYLE-----PTVEKLVA-CTTHFYEGVRKSALSSLWRCATTYYKVCNV 717


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 16  LFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIF 126
           LFT  +N+++++I   +   QQF G+ A+  +S  IF
Sbjct: 323 LFTVPSNRRSLFIGCFLQWFQQFSGTNAIQYFSAIIF 359


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 552 DSALQT*RRLYICVLAGTRTA*H*SGTSPRL*HTARLISRWRSTRC 415
           D  LQT  RL +     +R   H  GT   L    RL+ RW    C
Sbjct: 734 DELLQTDARLRLFHTVSSRLRTHHLGTDVPLSRYCRLVRRWDEESC 779


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 151 LPNGTLEDKTRKSIEPY 201
           LPNG  ED+ R+ +EP+
Sbjct: 213 LPNGITEDEIREDLEPF 229


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 245 SCPSPRGPSRTQTASLAIDFGRRTNEWNNRNVFLLLRYEQAS 370
           S PSP  PS TQT S    F +R N   N N    ++ E++S
Sbjct: 422 SPPSPSTPSNTQTDSY---FIQRENTPTNHNSIPTIQLEKSS 460


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +1

Query: 103 VAYSQFIFNCTTGPTILP-----NGTLEDKTRKSIEPYQESIIIGCVQVATCIL 249
           V ++ +++  T    I P     N TLED T   ++ Y E+ I+    +  C L
Sbjct: 40  VNFTTYVYPDTNSTNIFPMPKCQNITLEDATIDQLQNYMENGILTSTDIVHCYL 93


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 342  FYFYDTNKQAVQNVSWILLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYAFLQ 509
            FY ++ N       +W++L+   +Y     IG++T+   +IG     +   + F+Q
Sbjct: 1195 FYEFNHNIPFYGGFAWLMLMIFTLYYTTLGIGIATIS-PSIGTASIISGTAFVFIQ 1249


>SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 654 YQKTKRESSFRLQFPSANWRPRRS 725
           +   KR SSFR  FPS N  P  +
Sbjct: 15  FTNAKRYSSFRFLFPSKNLDPNET 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,590
Number of Sequences: 5004
Number of extensions: 67727
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)