BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30831 (725 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 28 1.2 SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 28 1.6 SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 3.6 SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 4.8 SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 4.8 SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.3 SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 26 6.3 SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.3 >SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pombe|chr 2|||Manual Length = 1067 Score = 28.3 bits (60), Expect = 1.2 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +3 Query: 420 VCYAIGLSTVPYVTIGEMFPTNVKLYAFLQAHIYTGVAMFAVQNLFRVVEQAYRIYTV 593 +C +G PY+ PT KL A H Y GV A+ +L+R Y++ V Sbjct: 666 ICMYVGAPFTPYLE-----PTVEKLVA-CTTHFYEGVRKSALSSLWRCATTYYKVCNV 717 >SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 557 Score = 27.9 bits (59), Expect = 1.6 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +1 Query: 16 LFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIF 126 LFT +N+++++I + QQF G+ A+ +S IF Sbjct: 323 LFTVPSNRRSLFIGCFLQWFQQFSGTNAIQYFSAIIF 359 >SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1066 Score = 26.6 bits (56), Expect = 3.6 Identities = 16/46 (34%), Positives = 19/46 (41%) Frame = -3 Query: 552 DSALQT*RRLYICVLAGTRTA*H*SGTSPRL*HTARLISRWRSTRC 415 D LQT RL + +R H GT L RL+ RW C Sbjct: 734 DELLQTDARLRLFHTVSSRLRTHHLGTDVPLSRYCRLVRRWDEESC 779 >SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 529 Score = 26.2 bits (55), Expect = 4.8 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +1 Query: 151 LPNGTLEDKTRKSIEPY 201 LPNG ED+ R+ +EP+ Sbjct: 213 LPNGITEDEIREDLEPF 229 >SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosaccharomyces pombe|chr 3|||Manual Length = 877 Score = 26.2 bits (55), Expect = 4.8 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 245 SCPSPRGPSRTQTASLAIDFGRRTNEWNNRNVFLLLRYEQAS 370 S PSP PS TQT S F +R N N N ++ E++S Sbjct: 422 SPPSPSTPSNTQTDSY---FIQRENTPTNHNSIPTIQLEKSS 460 >SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 583 Score = 25.8 bits (54), Expect = 6.3 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Frame = +1 Query: 103 VAYSQFIFNCTTGPTILP-----NGTLEDKTRKSIEPYQESIIIGCVQVATCIL 249 V ++ +++ T I P N TLED T ++ Y E+ I+ + C L Sbjct: 40 VNFTTYVYPDTNSTNIFPMPKCQNITLEDATIDQLQNYMENGILTSTDIVHCYL 93 >SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1396 Score = 25.8 bits (54), Expect = 6.3 Identities = 13/56 (23%), Positives = 27/56 (48%) Frame = +3 Query: 342 FYFYDTNKQAVQNVSWILLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYAFLQ 509 FY ++ N +W++L+ +Y IG++T+ +IG + + F+Q Sbjct: 1195 FYEFNHNIPFYGGFAWLMLMIFTLYYTTLGIGIATIS-PSIGTASIISGTAFVFIQ 1249 >SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 100 Score = 25.4 bits (53), Expect = 8.3 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 654 YQKTKRESSFRLQFPSANWRPRRS 725 + KR SSFR FPS N P + Sbjct: 15 FTNAKRYSSFRFLFPSKNLDPNET 38 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,202,590 Number of Sequences: 5004 Number of extensions: 67727 Number of successful extensions: 178 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 171 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 178 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 341222980 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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