Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30831
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391... 41 0.001
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 40 0.002
05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458... 40 0.003
11_06_0528 - 24681630-24681751,24681911-24682025,24682134-246821... 38 0.008
03_03_0040 - 13999040-13999179,13999524-13999638,13999759-139998... 36 0.033
02_02_0155 + 7272563-7272630,7272934-7273031,7273491-7274057,727... 34 0.100
02_05_1340 + 35797923-35799881 34 0.13
11_04_0293 + 15926561-15928834 33 0.17
10_08_1053 - 22575281-22575409,22575516-22575653,22575786-225758... 33 0.23
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 33 0.23
01_01_0216 + 1843413-1843509,1844583-1844694,1844841-1844908,184... 33 0.23
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161... 31 1.2
11_06_0421 + 23331702-23331723,23332161-23332197,23333397-233335... 29 2.8
10_08_0784 + 20529526-20529604,20529996-20530562,20530687-205316... 29 2.8
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 28 6.6
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 28 8.7
>05_07_0151 +
28038178-28038480,28038578-28038667,28039130-28039189,
28039274-28039339,28039562-28039627,28039719-28039794,
28039972-28040036,28040115-28040192,28040362-28040442,
28040526-28040610,28040702-28040748,28040969-28041028,
28041179-28041244,28041327-28041386,28041524-28041638,
28041733-28041845
Length = 476
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Frame = +3
Query: 381 VSWILLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVK----LYAFLQAHIYTGVAMFAVQ 548
+S I LVAL+ YI+ ++ G+ +P+V + E+ P ++K +A L A++ T A+
Sbjct: 372 LSMISLVALVAYIITFSFGMGAIPWVMMSEILPVSIKSLGGSFATL-ANMLTSWAITMTA 430
Query: 549 NLFR--VVEQAYRIYTVFWGFT-IFLISW 626
NL + Y + FT +F+I W
Sbjct: 431 NLLLSWSAGGTFLSYMIVSAFTLVFVIFW 459
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 378 NVSWILLVALIVYIVCYAIGLSTVPYVTIGEMFP 479
N W+ LVAL YIV Y+ G+ TVP++ E++P
Sbjct: 449 NFGWLALVALGAYIVSYSPGMGTVPWIVNSEIYP 482
>05_07_0152 +
28044733-28045032,28045131-28045220,28045770-28045829,
28045912-28045977,28046161-28046226,28046330-28046405,
28046721-28046785,28046879-28046971,28047302-28047322,
28047600-28047692,28047939-28047998,28048157-28048222,
28048314-28048373,28048498-28048612,28048738-28048850
Length = 447
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +3
Query: 381 VSWILLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYAFLQAHIYT-----GVAMFAV 545
+S I LVAL+ +++ ++ G+ +P++ + E+ P ++K A A + G+ M A
Sbjct: 343 LSMISLVALVAFVIAFSFGMGAIPWIIMSEILPVSIKSLAGSFATLANWLTSFGITMTAN 402
Query: 546 QNLFRVVEQAYRIYTVFWGFT-IFLISW 626
L + Y V FT +F+I W
Sbjct: 403 LMLSWSAGGTFVSYMVVSAFTLVFVILW 430
>11_06_0528 -
24681630-24681751,24681911-24682025,24682134-24682193,
24682454-24682513,24682606-24682668,24682752-24682798,
24682884-24683049,24683136-24683228,24683306-24683370,
24683462-24683537,24683644-24683709,24684114-24684203,
24684359-24684421,24684548-24684670
Length = 402
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 405 LIVYIVCYAIGLSTVPYVTIGEMFPTNVK 491
L VYI Y+IG+ VP+V + E+FP N+K
Sbjct: 303 LKVYIASYSIGMGAVPWVIMSEIFPINIK 331
>03_03_0040 -
13999040-13999179,13999524-13999638,13999759-13999818,
14000007-14000060,14000274-14000333,14000418-14000480,
14000552-14000595,14000671-14000755,14000904-14001028,
14001368-14001432,14001460-14001518,14001678-14001743,
14001870-14001935,14002019-14002105,14002168-14002257,
14002378-14002440,14003153-14003419
Length = 502
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 390 ILLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYAFLQAHIYTGVAMFAVQNLF 557
+ L ++VYI Y+IG+ VP+V + E+F ++K + + + FA+ F
Sbjct: 392 LALTGILVYIGAYSIGMGPVPWVVMSEIFSIDMKAIGGSLVTLVSWLGSFAISYSF 447
>02_02_0155 +
7272563-7272630,7272934-7273031,7273491-7274057,
7275121-7276085,7276201-7276388,7276497-7276938
Length = 775
Score = 34.3 bits (75), Expect = 0.100
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 399 VALIVYIVCYAIGLSTVPYVTIGEMFPTNVK 491
+++I+Y C+ +G +P + E+FPT V+
Sbjct: 665 ISVIIYFCCFVMGFGPIPNILCAEIFPTRVR 695
>02_05_1340 + 35797923-35799881
Length = 652
Score = 33.9 bits (74), Expect = 0.13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 402 ALIVYIVCYAIGLSTVPYVTIGEMFPTNVK 491
+++VY+ C+ +G +P + E+FPT V+
Sbjct: 537 SVVVYLCCFVMGFGPIPNILCAEIFPTRVR 566
>11_04_0293 + 15926561-15928834
Length = 757
Score = 33.5 bits (73), Expect = 0.17
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 402 ALIVYIVCYAIGLSTVPYVTIGEMFPTNVK 491
++IVY C+ +G +P + E+FPT V+
Sbjct: 645 SVIVYFCCFVMGFGPIPNILCAEIFPTRVR 674
>10_08_1053 -
22575281-22575409,22575516-22575653,22575786-22575884,
22576281-22576361,22577171-22577233,22577473-22577520,
22577622-22577990,22578082-22578183,22578290-22578414,
22578500-22578566,22578817-22578895,22578928-22579079,
22579182-22579223
Length = 497
Score = 33.1 bits (72), Expect = 0.23
Identities = 9/40 (22%), Positives = 26/40 (65%)
Frame = +3
Query: 372 VQNVSWILLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVK 491
+++ ++ ++AL++Y+ CY + + ++ I E+FP ++
Sbjct: 390 LKDAPYVAVIALLLYVGCYQLSFGPIGWLMISEVFPLRLR 429
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 33.1 bits (72), Expect = 0.23
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 387 WILLVALIVYIVCYAIGLSTVPYVTIGEMFP 479
W+ + L +YI ++ G+ TVP++ E++P
Sbjct: 463 WLAMAGLALYIAAFSPGMGTVPWIVNSEVYP 493
>01_01_0216 +
1843413-1843509,1844583-1844694,1844841-1844908,
1845165-1845297,1845404-1845503,1845562-1845722,
1846095-1846188,1846273-1846426,1846597-1846743,
1846819-1846892,1846985-1847073,1847161-1847275,
1847569-1847751
Length = 508
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +3
Query: 390 ILLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYAFLQAHIYTGVAMFAVQNLFRVVE 569
+ + ++Y++ +A+G VP + + E+F + ++ A + V+ F + F V
Sbjct: 403 LAVAGTVLYVLSFALGAGPVPALLLPEIFASRIRAKAVALSLGMHWVSNFFIGLYFLSVV 462
Query: 570 QAYRIYTVFWGF 605
+ I TV+ GF
Sbjct: 463 NKFGISTVYLGF 474
>03_01_0204 +
1611837-1611840,1611926-1612048,1614570-1614659,
1615529-1616095,1616235-1616959,1617065-1617252,
1617331-1617778
Length = 714
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 405 LIVYIVCYAIGLSTVPYVTIGEMFPTNVK 491
+I+Y+ C+ +G +P V E+FP + +
Sbjct: 604 VIIYVCCFVMGFGPIPNVLCSELFPPSCR 632
>11_06_0421 +
23331702-23331723,23332161-23332197,23333397-23333533,
23333675-23334241,23335068-23335777,23335915-23336102,
23336489-23336918
Length = 696
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 399 VALIVYIVCYAIGLSTVPYVTIGEMFPTNVK 491
++L + Y IGL +P + EMFPT +
Sbjct: 590 LSLTICFCSYVIGLGPIPNILCSEMFPTRAR 620
>10_08_0784 +
20529526-20529604,20529996-20530562,20530687-20531639,
20532292-20532479,20532578-20533013
Length = 740
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 399 VALIVYIVCYAIGLSTVPYVTIGEMFPTNVK 491
V++I+Y + +G +P + E+FPT V+
Sbjct: 632 VSVILYFCFFVMGFGPIPNILCAEIFPTTVR 662
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 438 LSTVPYVTIGEMFPTNVKLYAFLQAHI-YTGVAMFAVQNLFRVVEQAYRIYTVFWGFTIF 614
L+ P+ + G +FPT V +L I + G +F V+ + YR+Y +F
Sbjct: 279 LTEFPHGSSGLVFPTLVAGLHYLNIQIAFHGTHTKHYPGIFGVLAKYYRVYLEILTIPLF 338
Query: 615 LISW 626
LI +
Sbjct: 339 LIGY 342
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +3
Query: 381 VSWILLVALIVYIVCYAIGLSTVPYVTIGEMFP 479
+ W + L +YI ++ G+ VP+ E++P
Sbjct: 370 LGWFAVAGLALYIAFFSPGMGPVPWAVNSEIYP 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,799,285
Number of Sequences: 37544
Number of extensions: 438019
Number of successful extensions: 1061
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -