Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30831
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    42   5e-04
SB_42747| Best HMM Match : Sugar_tr (HMM E-Value=0.23)                 32   0.41 
SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                31   1.3  
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)                30   2.2  
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_41940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_46144| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_45055| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46)            29   3.8  
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)            29   5.1  
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_20928| Best HMM Match : NHL (HMM E-Value=0)                         28   8.9  
SB_51890| Best HMM Match : BCCT (HMM E-Value=0)                        28   8.9  
SB_38537| Best HMM Match : VWA (HMM E-Value=0)                         28   8.9  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 18/73 (24%), Positives = 37/73 (50%)
 Frame = +3

Query: 381 VSWILLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYAFLQAHIYTGVAMFAVQNLFR 560
           +SW+ + +++V+ + +A+    VP++ + E+FP   +  A   + +      FAV   F 
Sbjct: 394 ISWLAITSIVVFNLVFALAWGPVPWLVMSEIFPLQARGIASSISTLCNWSLAFAVTKTFV 453

Query: 561 VVEQAYRIYTVFW 599
            +E A  I   +W
Sbjct: 454 NIEDAITIQGTYW 466


>SB_42747| Best HMM Match : Sugar_tr (HMM E-Value=0.23)
          Length = 527

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
 Frame = +3

Query: 390 ILLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYAFL---QAHIYTGVAMFAVQNLFR 560
           +L+ A  +    +  G   + YV   E+FPT ++LY FL   +  +Y  +++   + L+R
Sbjct: 333 MLITAFAICGSAFTYGTYCLIYVMFAELFPTVIRLYRFLSLVETRLYRFLSLVKTR-LYR 391

Query: 561 ----VVEQAYRIYT 590
               V  + YR+YT
Sbjct: 392 FLSLVKTRLYRLYT 405


>SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 40  KAMWITLGV--FTVQQFCGSAAVVAYSQFIFNCTTGPTILPNGTLEDKTRK 186
           K +W T     +  ++F GS  V    +  F+CT GP ++  GTL  K RK
Sbjct: 491 KEIWETRNTSKYRRKKFSGSGKV----ESTFSCTCGPNVVQRGTLLQKKRK 537


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +3

Query: 456  VTIGEMFPTNVKLYAFLQAHIYTGVAMFAVQ--NLFRVVEQAYRIYTVFWGFTIFLISWT 629
            V +G     N  +  + QA+   G  +F++Q  N  R   +A+  Y+  WG       WT
Sbjct: 3214 VLLGRFRGRNAVMRCYHQAN-RRGYKVFSMQAHNECRSGPKAHNSYSA-WGRKGGCSRWT 3271

Query: 630  RLSWVNDAYQKTKRESS 680
              SW ND Y   KRE++
Sbjct: 3272 GGSWRNDVYVILKRENA 3288


>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
          Length = 660

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 161 PFGSIVGPVVQLNINCEYATTAALPQNCCTVKTPRVIHIAFLLVASVNK 15
           PF  +  PVV  N+  E+     +PQ  C  +T +  H+ F     V K
Sbjct: 9   PFPCLFPPVVPKNVLAEWLDVQKVPQYHC-AETEKYAHVTFFFNGGVEK 56


>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/69 (20%), Positives = 38/69 (55%)
 Frame = +3

Query: 375  QNVSWILLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYAFLQAHIYTGVAMFAVQNL 554
            + V+ +LL+  ++Y+VC++  L  + Y+ +   + +N  +Y+  +A +    ++  +  +
Sbjct: 819  KTVTKMLLIVTVIYVVCWSSDL--ILYMLLASQWNSNDPIYSLPEALVLLNSSVNPI--I 874

Query: 555  FRVVEQAYR 581
            F +  Q +R
Sbjct: 875  FTIYSQRFR 883


>SB_41940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/103 (21%), Positives = 44/103 (42%)
 Frame = +3

Query: 354 DTNKQAVQNVSWILLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYAFLQAHIYTGVA 533
           D + +A + +S I L A+ + +V  AI             F  +      L + ++ G  
Sbjct: 73  DQSSKAFETISVITLHAVAINLVVIAINRMNAIANPFKNTFIFSKAKVLMLISCVWIGAI 132

Query: 534 MFAVQNLFRVVEQAYRIYTVFWGFTIFLISWTRLSWVNDAYQK 662
           + AV  L     +A+  Y+       FL+++ R+ W+ +  Q+
Sbjct: 133 LMAVFLLETQEGKAFSPYSHLLLILTFLLAYVRIFWIANKQQR 175


>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1441

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +2

Query: 239 PVSCPSPRGPSRTQTASLAIDFGRRTNEWNNRNVFLLLRYEQASRTER*LDTSSGPYRL 415
           P   PSPRGP   +     +D G  T  WN     +  R  Q  RT   +D  S P +L
Sbjct: 40  PTPAPSPRGPKLERP---KVDIGVSTEGWN-----VFTRRWQVFRTGSGIDDDSAPSQL 90


>SB_46144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 140 PVVQLNINCEYATTAALPQNCCTVKTPRVI 51
           P   + +  +YAT  +LPQ+ C VK P+ I
Sbjct: 16  PGSNIYVKRQYATRLSLPQDVCAVKMPKNI 45


>SB_45055| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46)
          Length = 741

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 170 KTKPVKVSNPIKNLS**DACRL-LPVSCPSPRGPSRTQTASLAIDFGRRTNEWNNRN 337
           K  P  ++N IKNL      RL LP    SP  P+ T+  +  ++ GRR  +WN  N
Sbjct: 326 KNWPKNLANSIKNLH----VRLWLPSRITSPEPPA-TRPHTGRVEAGRRLAKWNRMN 377


>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
          Length = 1405

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +2

Query: 233 LLPVSCPSPRGPSRTQTASLAIDFGRRTNEWNNRNVFLLLRYEQASRTER*LDTSSGPYR 412
           L P   P+PRGP   +     +D G  T  WN     +  R  Q  RT   +D  S P +
Sbjct: 42  LRPTPAPAPRGPKLERP---KVDIGVSTEGWN-----VFTRRWQVFRTGSGIDDDSAPSQ 93

Query: 413 L 415
           L
Sbjct: 94  L 94


>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
 Frame = +3

Query: 357 TNKQAVQNVSWILL-VALIV---YIVCYAIGLSTVPYVTIGEMFPTNVKLYAFLQAHIYT 524
           TN   + N+++++  VA+I    Y++     ++ + Y+       TN+       A++ T
Sbjct: 6   TNVAVITNMAYLITNVAVITNMAYLITNVAVITNMAYLITNVAVITNMAYLITNMAYLIT 65

Query: 525 GVAMFAVQNLFRVVEQAYRIYTVFWGFTI-FLISWTR 632
            VA       + +   AY I  V   F + +L++  R
Sbjct: 66  NVAYLITNMAYLITNMAYLITNVAGNFAVCYLLTRAR 102


>SB_20928| Best HMM Match : NHL (HMM E-Value=0)
          Length = 795

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 605 EPPEHCVNSISLFDNPEEILHCKHSDACIYVCLQERVQLD 486
           +PPE C   ++ ++NP ++L C H+  C   CL E +  D
Sbjct: 10  QPPEVCPKCMNAYENP-KVLPCLHT-FCSQ-CLSEELHRD 46


>SB_51890| Best HMM Match : BCCT (HMM E-Value=0)
          Length = 677

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 591 VFWGFTIFLISWTRLSWVNDAYQKTKR 671
           + WGF +F + WT L+   D+  K KR
Sbjct: 43  IIWGFVVFCLRWTDLA--GDSLPKGKR 67


>SB_38537| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1174

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 569 FDNPEEILHCKHSDACIYVCLQERVQLDISREHL 468
           +D P E   C HSD C +VC +  V    S E L
Sbjct: 755 WDCPGEQKCCLHSDGCHFVCAEPPVSCKKSMEIL 788


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,579,932
Number of Sequences: 59808
Number of extensions: 549199
Number of successful extensions: 1507
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)