Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30829
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.8  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   5.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 309 SLAVSALRAFDMAW*IGRTPQKISFHQ 229
           SL    L AFDMA  I  TP++I + Q
Sbjct: 308 SLRKFILSAFDMARIIQITPKRIQYAQ 334


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 309 SLAVSALRAFDMAW*IGRTPQKISFHQ 229
           SL    L AFDMA  I  TP++I + Q
Sbjct: 346 SLRKFILSAFDMARIIQITPKRIQYAQ 372


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 96  QEAFQLFDS-RGDGKIHVAQIGDAL 167
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 96  QEAFQLFDS-RGDGKIHVAQIGDAL 167
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 425 QLLQGQEDSQGNINYENF 478
           Q +QG+E +  ++N ENF
Sbjct: 35  QEMQGKEKNSASLNSENF 52


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 198 DVKKCTLHLKPDERISFEVFCQFTRPYR 281
           DV  CT  +     IS + FC  T+P +
Sbjct: 121 DVLSCTASILNLCMISVDRFCAITKPLK 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,330
Number of Sequences: 438
Number of extensions: 4708
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)