Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30823
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0713 - 5332145-5332351,5332675-5332893,5334347-5334559,533... 38 0.006
01_07_0380 + 43181564-43181639,43182053-43182218,43182494-431826... 38 0.006
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073... 32 0.28
04_04_1563 - 34445832-34445891,34445981-34446097,34447363-344474... 31 0.64
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672... 30 1.5
11_03_0079 + 9669666-9669728,9670779-9672545 29 2.0
07_03_0849 + 21997758-21998423 29 2.6
02_05_0183 + 26537676-26537752,26538481-26538649,26538736-265389... 29 2.6
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 29 3.4
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 28 4.5
06_01_0806 - 6048042-6048138,6048461-6048550,6049362-6049425,604... 28 4.5
02_02_0353 + 9276316-9276518,9276915-9277314 28 4.5
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 28 4.5
01_04_0109 + 16112581-16112934 28 4.5
11_01_0537 + 4252546-4252969,4253739-4253785 28 6.0
07_01_0775 + 5976883-5978109 28 6.0
03_02_0760 + 10960381-10960461,10960740-10961003,10961334-109616... 28 6.0
03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689 28 6.0
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 28 6.0
>02_01_0713 -
5332145-5332351,5332675-5332893,5334347-5334559,
5334637-5334730,5334860-5335020,5335114-5335315,
5335619-5335784,5336208-5336286
Length = 446
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3
Query: 369 EALELDEGFQRAKEGLSRAQKLQKQSEQRDYYKILGVKRTAT 494
+AL D G +E L RA+K K S+++D+YKILG+ +TA+
Sbjct: 301 DALTQDMGI---REALMRAEKQLKLSKRKDWYKILGISKTAS 339
>01_07_0380 +
43181564-43181639,43182053-43182218,43182494-43182695,
43182789-43182949,43183079-43183172,43183250-43183462,
43184917-43185135,43185458-43185661
Length = 444
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3
Query: 369 EALELDEGFQRAKEGLSRAQKLQKQSEQRDYYKILGVKRTAT 494
+AL D G +E L RA+K K S+++D+YKILG+ +TA+
Sbjct: 300 DALTQDMGI---REALMRAEKQLKLSKRKDWYKILGISKTAS 338
>10_08_0435 +
17905728-17905901,17906608-17906931,17907205-17907321,
17908418-17908597,17909064-17909190,17909327-17909440,
17909794-17909909
Length = 383
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 336 EMYDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQRDYYKILG 476
E YD+AI K+ +ELD ++AK L R + L + ++ +++G
Sbjct: 300 EHYDEAIADMKKIIELDPSNEQAKRSLFRLEPLAAEKREKMKEEMIG 346
>04_04_1563 -
34445832-34445891,34445981-34446097,34447363-34447450,
34447626-34447675,34447848-34448285
Length = 250
Score = 31.1 bits (67), Expect = 0.64
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 336 EMYDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQRD 458
E Y A AY +AL+LD +R K +R QKL+++ D
Sbjct: 205 EEYRAAEDAYADALDLDPSIRRTKSFRARVQKLREKVANAD 245
>02_05_0969 + 33165396-33165935,33166352-33166883,33166988-33167242,
33167515-33167606,33167745-33167942,33168049-33168240,
33168341-33168562,33168858-33169024,33169117-33169210,
33169308-33169364,33169459-33169587,33169681-33169752,
33170180-33170293,33170419-33170580,33170666-33170794,
33171057-33171158,33171266-33171342,33171470-33171592,
33171666-33172227
Length = 1272
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 402 AKEGLSRAQKLQKQSEQRDYYKILGVKRTATKTRDHK 512
A++G+S K+ K+ E + L KRT TK R K
Sbjct: 1233 ARKGMSSVMKVTKKLEGKSAASALAAKRTQTKNRKQK 1269
>11_03_0079 + 9669666-9669728,9670779-9672545
Length = 609
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +1
Query: 157 RCPARRDRSHSGDLRGPKWLCSCAVKEELYSEAWGTAAARWSCAATRDCCA-TAPTRCSD 333
R PARR++ S + C C + + WG+ W + DC +AP CS
Sbjct: 9 RGPARRNQVPSPERARLIPRCGCRLSSK---HVWGSTGTPWHMLSALDCLLFSAPQSCSL 65
Query: 334 SRCTTTLSARTRRL 375
+ T T S RL
Sbjct: 66 AH-TWTASVMHNRL 78
>07_03_0849 + 21997758-21998423
Length = 221
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 202 GPKWLCSCAVKEELYSEA-WGTAAARWSCAATRDCCATAPTRCSDSRCTTTLSARTRRLW 378
G K S A +++Y A W +++ WS + + + S S TT +R+R L
Sbjct: 54 GSKKYSSAAALDDVYDAAEWSSSSVPWSSTSALSLDSARSSSSSSSTTTTAPCSRSRSLS 113
Query: 379 S 381
S
Sbjct: 114 S 114
>02_05_0183 +
26537676-26537752,26538481-26538649,26538736-26538910,
26539008-26539137,26540425-26540558,26540629-26540771,
26540894-26541092,26541183-26541514
Length = 452
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 429 KLQKQSEQRDYYKILGVKRTATKTRDHKGVQEGSAES 539
++ K+S YY++LGV +TAT+ K ++ + ++
Sbjct: 36 RMPKKSNNTKYYEVLGVSKTATQDELKKAYRKAAIKN 72
>05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 339 MYDDAIRAYKEALELDEGFQRAKEGLSRAQKLQK 440
M DA+ Y+ AL ++ + AK+GL R +K K
Sbjct: 935 MLSDALSHYQSALRINPHNEAAKKGLERLEKQMK 968
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 336 EMYDDAIRAYKEALELDEGFQRAKEGLSRA-QKLQKQSEQRDYYKILGVKRTATKTRDHK 512
+++ DAI+ KE E + AKE L +A ++ + RD + KR K+ K
Sbjct: 663 DLHCDAIKCAKEGSASSELYSVAKEALHKALDEVVTLRKIRDQQNLQSCKRPIKKSAKGK 722
Query: 513 GVQEGSAESGTRDS 554
+ S TR S
Sbjct: 723 DSDHSTIISSTRFS 736
>06_01_0806 -
6048042-6048138,6048461-6048550,6049362-6049425,
6049504-6049552,6050403-6050459,6050953-6051024,
6051912-6052003,6052542-6052614,6052686-6052748,
6052837-6052901,6053803-6053890,6053974-6054015,
6054097-6054188,6054601-6054688,6055134-6055225,
6055368-6055419
Length = 391
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 435 QKQSEQRDYYKILGVKRTATK 497
Q S ++DYYKILGV + A++
Sbjct: 19 QHSSPEKDYYKILGVPKDASQ 39
>02_02_0353 + 9276316-9276518,9276915-9277314
Length = 200
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 479 QEDGDENKRSQGRTGRQRRKWHPGQLPR 562
Q +G + RS+ R R+RR+W P PR
Sbjct: 149 QAEGLVDDRSRSRHRRRRRRWCPSSSPR 176
>02_01_0478 -
3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = -1
Query: 125 SLNSCLH-----TPGEVCPLFSPSCKTENISCAP 39
SLN C TPG VCP S SC +E+I P
Sbjct: 615 SLNCCCEGQAFCTPGTVCPPNSKSCGSESIKEPP 648
>01_04_0109 + 16112581-16112934
Length = 117
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 406 RKVSAEHRNCKNNPNKEIITKSWASRGRRRKQEITRAYRKAAQK 537
R +A H+ NN + TK + RRR+ + A RKAA +
Sbjct: 22 RATAATHQRTANNHQSDARTKPTTAGSRRRQGRGSSAARKAAAR 65
>11_01_0537 + 4252546-4252969,4253739-4253785
Length = 156
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 425 TETAKTIRTKRLLQNPGRQEDGDENKRSQGRTGRQRRKWHPGQLP 559
T TA T + +R R+ GD +R +G GR+R H LP
Sbjct: 56 TATATTKKRRRSSGRRWRRCSGDLRRRRRGGRGRRRDGDHDDDLP 100
>07_01_0775 + 5976883-5978109
Length = 408
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 301 CCATAPTRCSDSRCTTTLSA 360
CC P+ +D+ CTTTL A
Sbjct: 295 CCDVPPSPAADAACTTTLPA 314
>03_02_0760 +
10960381-10960461,10960740-10961003,10961334-10961619,
10961637-10962394
Length = 462
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 416 QPSTETAKTIRTKRLLQNPGRQEDGDENKRSQGRTGRQRRKWHPGQLPRG 565
Q E A+ + +RLL+ G E +R R +QRR+ P +PRG
Sbjct: 35 QSRAEVAERNKRRRLLEVKAELRRGREEER---RGEKQRREEEPTMVPRG 81
>03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689
Length = 328
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 424 HRNCKNNPNKEIITKSWASRGRRRKQEITRAYRKAAQKVA 543
HR P+ I + WA+ RRR Q + ++ + ++ A
Sbjct: 18 HRRPLFLPSTSIASSRWATAARRRSQAVAHQFQASTRRAA 57
>02_02_0279 -
8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 190 GDLRGPKWLCSCAVKEELYSEAWGTAAARWSCAATRDCC 306
GD+ WL A +E + +WG+AA W D C
Sbjct: 612 GDMASWMWLLLLADWDEAGTFSWGSAALAWLYRQLCDAC 650
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,246
Number of Sequences: 37544
Number of extensions: 241875
Number of successful extensions: 991
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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