Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30823
(566 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-11
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32) 44 9e-05
SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_602| Best HMM Match : TSP_1 (HMM E-Value=1e-27) 28 4.6
SB_55075| Best HMM Match : Keratin_B2 (HMM E-Value=0.46) 28 4.6
SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18) 28 4.6
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 28 4.6
SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9) 28 4.6
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 28 6.1
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 28 6.1
SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/77 (41%), Positives = 50/77 (64%)
Frame = +3
Query: 336 EMYDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQRDYYKILGVKRTATKTRDHKG 515
EMY++A+ +++A ++E + +EGL RAQ+L KQS++RDYYKILG+KR K K
Sbjct: 168 EMYNEAVNDFQKAKSINEHLHKVQEGLDRAQRLLKQSQKRDYYKILGLKRNCNKREITKA 227
Query: 516 VQEGSAESGTRDSYHGD 566
++ A D+Y G+
Sbjct: 228 YRK-LAVKWHPDNYKGE 243
>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +3
Query: 336 EMYDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQRDYYKILGVKRTATKTRDHKG 515
E Y++A+R Y+ + D + + L +A+ K+S+++DYYKIL + +TA++ K
Sbjct: 119 EKYEEAVRDYESLCKKDRSSREFRRLLEKAKLELKKSKRKDYYKILNISKTASEDEIKKA 178
Query: 516 VQE 524
++
Sbjct: 179 YKK 181
>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
Length = 264
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +3
Query: 336 EMYDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQRDYYKILGVKRTATKTRDHKG 515
E Y++A+R Y+ + D + + L +A+ K+S+++DYYKIL + +TA++ K
Sbjct: 119 EKYEEAVRDYESLCKKDRSSREFRRLLEKAKLELKKSKRKDYYKILNISKTASEDEIKKA 178
Query: 516 VQE 524
++
Sbjct: 179 YKK 181
>SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 404 EGRSQPSTETAKTIRTKRLLQNPGRQEDGDENKR 505
+G + P + TAK +R K L Q+ + D +ENKR
Sbjct: 15 KGCNDPESLTAKMLRNKYLEQHDMKSLDSEENKR 48
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +1
Query: 325 CSDSRCTTTLSARTRRLWS*MKGFSERRKVSAEHRNCKNNPNKEIITKSWASRGRRRKQE 504
C+ S T +A++R + S + +S RK R K+N ++ K ++E
Sbjct: 16 CARSALKTAGNAQSRNI-STLNNYSRLRKSLVSARLSKDNLQRKDYYKILGVPPNANQKE 74
Query: 505 ITRAYRKAAQKVAPGT 552
I +AY + A+K P T
Sbjct: 75 IKKAYFELAKKYHPDT 90
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 393 FQRAKEGLSRAQKLQKQSEQRDYYKILGVKRTATKTRDHKGVQE 524
+ R ++ L A+ + +++DYYKILGV A + K E
Sbjct: 38 YSRLRKSLVSARLSKDNLQRKDYYKILGVPPNANQKEIKKAYFE 81
>SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 768
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 319 TRCSDSRCTTTLSARTRRLWS*MKGFSER--RKVSAEHRNCKNNPNKEIITK---SWAS 480
T CS + C+ + +RTR + +G R + E RNC N+P K TK W+S
Sbjct: 306 TTCSVT-CSGGVQSRTRFCLNPFRGLDRPACRGDNREERNCNNHPCKTTATKLNGGWSS 363
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 404 EGRSQPSTETAKTIRTKRLLQNPGRQEDGDENKRSQGRTGRQRRKW 541
+G++QPS ++ Q P RQ+D + K Q R R R W
Sbjct: 77 KGKAQPSPR-------RQAAQRPSRQKDAKQRKEMQERESRLRNCW 115
>SB_602| Best HMM Match : TSP_1 (HMM E-Value=1e-27)
Length = 590
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 319 TRCSDSRCTTTLSARTRRLWS*MKGFSER--RKVSAEHRNCKNNPNKEIITK---SWAS 480
T CS + C+ + +RTR + +G R + E RNC N+P K TK W+S
Sbjct: 157 TTCSVT-CSGGVQSRTRFCLNPFRGLDRPACRGDNREERNCNNHPCKTTATKLNGGWSS 214
>SB_55075| Best HMM Match : Keratin_B2 (HMM E-Value=0.46)
Length = 202
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 436 KNNPNKEIITKSWASRGRRRKQEITRAYRKAAQKVAPGTAT 558
KNN + + I + W ++ Q+I R + Q PG T
Sbjct: 38 KNNLSSQDIVRLWTNKNNLSSQDIVRLWTNNKQSKQPGHCT 78
>SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18)
Length = 844
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 182 LLSLRAGQRKHSSCILQNLSLNSCLHTPGEVCPLFSPSCKTENISCA 42
L+ L AG SS ++ ++ C + GE+C + P T+ +SCA
Sbjct: 171 LMQLTAGD---SSDDYRSEAVTVCASSFGEICNVVGPELTTDKLSCA 214
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 395 SASEGRSQPSTETAKTIRTKRLLQNPGRQEDGDENKRSQGRTGRQRRK 538
S RS+ ++T+R+K+ + R + RS+ RT R+R +
Sbjct: 456 SRIRSRSRSQELDSRTLRSKKSFERRSRASHRESRSRSKSRTKRERSR 503
>SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)
Length = 237
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 208 KWLCSCAVKEELYSEAWGTAAARWSCAATR 297
KW CA +Y++ W T A+WS T+
Sbjct: 209 KWSTVCAKCSTVYAK-WSTVCAKWSTVCTK 237
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 396 QRAKEGLS-RAQKLQK-QSEQRDYYKILGVKRTATKTRDHKGVQEGSAESGTRDS 554
QR ++ L+ + Q+ QK + E DY K+L + K + H+ + + S RDS
Sbjct: 154 QRKRKRLALKRQRAQKCKQEAADYAKLLAKRAKEAKEKRHEQLMKKRRASSLRDS 208
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 470 PGRQEDGDENKRSQGRTGRQRRKWHPGQLPRG 565
PG++ G + K +Q T RQR +W PG+ P G
Sbjct: 301 PGKEPGGHQAK-NQAVT-RQRTRWSPGKEPGG 330
>SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 437 KTIRTKRLLQNPGRQEDGDENK 502
+T + KRL + PG+++D +EN+
Sbjct: 191 ETYKPKRLYRKPGKEDDDEENR 212
>SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 387 EGFQRAKEGLSRAQKLQKQSEQRDYYKIL 473
+G Q AK+GL+ Q LQ+ + ++Y ++
Sbjct: 160 QGIQYAKQGLAITQGLQRAQSEAEFYIVI 188
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,926,349
Number of Sequences: 59808
Number of extensions: 291751
Number of successful extensions: 1218
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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