Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30823
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    63   2e-10
AC024811-1|AAF60776.1|  494|Caenorhabditis elegans Dnaj domain (...    47   1e-05
Z81058-8|CAB02923.1|  442|Caenorhabditis elegans Hypothetical pr...    31   0.76 
U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U80439-4|AAB37641.2|  274|Caenorhabditis elegans Dnaj domain (pr...    29   2.3  
Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small glutamine...    28   5.4  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    28   5.4  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    28   5.4  
U50313-2|AAY86230.1|  883|Caenorhabditis elegans Inositol 1,4,5-...    27   7.1  
U50313-1|AAY86229.1|  923|Caenorhabditis elegans Inositol 1,4,5-...    27   7.1  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    27   7.1  
AF016674-1|AAB66132.1|  160|Caenorhabditis elegans Hypothetical ...    27   7.1  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/54 (53%), Positives = 40/54 (74%)
 Frame = +3

Query: 336 EMYDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQRDYYKILGVKRTATK 497
           E YD AI  Y++A E++   + AKEGL  A++L+ Q+ +RDYYKILGVKR A+K
Sbjct: 339 EDYDSAIEDYQKATEVNPDHREAKEGLEHAKRLKTQAGKRDYYKILGVKRNASK 392



 Score = 31.1 bits (67), Expect = 0.58
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 2   ALKEIRECLKLDPEHXXXXXXXXXXXXXDKLLQECEDKSSARDFAGCMK 148
           +L  IRECLKL+P+H              K L+  + K    D+  C++
Sbjct: 227 SLNVIRECLKLNPDHKSCYPFYKKLRKVVKSLESMKKKVENSDWMACLE 275



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 409 KVSAEH-RNCKNNPNKEIITKSWASRGRRRKQEITRAYRKAAQKVAP 546
           K   EH +  K    K    K    +    K+EIT+AYRK AQK  P
Sbjct: 362 KEGLEHAKRLKTQAGKRDYYKILGVKRNASKREITKAYRKLAQKWHP 408


>AC024811-1|AAF60776.1|  494|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 28 protein.
          Length = 494

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/54 (42%), Positives = 33/54 (61%)
 Frame = +3

Query: 336 EMYDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQRDYYKILGVKRTATK 497
           E YD AI  Y++A E D      + G  +A++ ++   +RDYYKILGV+R A K
Sbjct: 340 EEYDMAIADYEKAEEWDSSNDAVRTGKDQAKRAKELVGKRDYYKILGVRRNANK 393



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 481 RGRRRKQEITRAYRKAAQKVAP 546
           R    K+EIT+AYRK AQK  P
Sbjct: 388 RRNANKREITKAYRKMAQKWHP 409



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 2   ALKEIRECLKLDPEHXXXXXXXXXXXXXDKLLQECEDKSSARDFAGCMKS 151
           +L  IRECLKL+P+H              K L   +     +++  C+++
Sbjct: 228 SLGSIRECLKLNPDHKKCYTSYKSLKKIVKSLDSMKASIEQQEWTKCLET 277


>Z81058-8|CAB02923.1|  442|Caenorhabditis elegans Hypothetical
           protein F11E6.8 protein.
          Length = 442

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 551 VPGATFCAAFLYALVISCFRRRPLDAQDFVIIS 453
           +P  T C   +Y L+  C+R  P D  DFV +S
Sbjct: 364 LPQPTHCPDIIYDLMQCCWRSTPEDRPDFVFLS 396


>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 339 MYDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQRDYYKILGVKRTATKTRDHKGV 518
           ++DD+ +  ++ +EL  GF      L R +K   Q ++ D ++++  KR+AT   D +  
Sbjct: 392 LFDDSEQLSRQIIELSRGFPNNCNELIRLKK-NTQEQKFDSWEVMW-KRSATSGADFRVP 449

Query: 519 QEGSAE 536
             G A+
Sbjct: 450 DNGFAK 455


>U80439-4|AAB37641.2|  274|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 4 protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 387 EGFQRAKEG--LSRAQKLQKQSEQRDYYKILGVKRTAT 494
           +GF+ +  G  + +A+   K+  QR +Y++LGV+ TAT
Sbjct: 3   QGFRWSPHGFWVCQARFFNKKIRQRTHYEVLGVESTAT 40


>Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical
           protein R03E1.3 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 411 GLSRAQKLQKQSEQRDYYKILGVKRTATKTR 503
           GLS+ Q+L+KQ   +  YK+  VK  AT T+
Sbjct: 23  GLSKEQQLEKQLMVKYNYKVRPVKSEATVTQ 53


>U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small
           glutamine-rich tetratricorepeat protein protein 1
           protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 342 YDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSE 449
           Y+ A  AYK+ALEL+   +  K  L  A+   K+ E
Sbjct: 188 YEHAAEAYKKALELEPNQESYKNNLKIAEDKLKELE 223


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
            protein Y51H4A.12 protein.
          Length = 1677

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 397  SERRKVSAEHRNCKNNPNKEIITKSWASRGRRRKQEITRAYRKAAQK 537
            SERR+ +AE     ++  +E      A   RRR +E  R  R A  K
Sbjct: 1122 SERRRFAAERHRAMDHKKREAEEARRADEERRRLEEEVRRERAAKTK 1168


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
            protein Y80D3A.8 protein.
          Length = 1293

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = +3

Query: 366  KEALELDEGFQRAKEGLSRAQKLQKQSEQRDYYKILGVKRTATKTRDHKGVQEGSAESGT 545
            KE +E      R KE  S A++ QK+ +  +  ++   K    + +  KG+++ +     
Sbjct: 933  KEKIEQLNAKVREKEERSEARRKQKEKDDEEEKRLYEEKEKEQRKKQIKGIEKWTKSMDF 992

Query: 546  RDSY 557
            +D++
Sbjct: 993  KDNH 996


>U50313-2|AAY86230.1|  883|Caenorhabditis elegans Inositol
           1,4,5-trisphosphate receptorinteracting protein protein
           1, isoform b protein.
          Length = 883

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 153 ALFMHPAKSLAELLSSHSWRSLST 82
           ALF+HP +  ++LL+S  W  + T
Sbjct: 580 ALFLHPLRHGSDLLASADWMKIKT 603


>U50313-1|AAY86229.1|  923|Caenorhabditis elegans Inositol
           1,4,5-trisphosphate receptorinteracting protein protein
           1, isoform a protein.
          Length = 923

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 153 ALFMHPAKSLAELLSSHSWRSLST 82
           ALF+HP +  ++LL+S  W  + T
Sbjct: 580 ALFLHPLRHGSDLLASADWMKIKT 603


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
            protein F15E6.1 protein.
          Length = 1655

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 397  SERRKVSAEHRNCKNNPNKEIITKSWASRGRRRKQEITRAYRKAAQK 537
            SERR+ +AE     ++  +E      A   RRR +E  R  R A  K
Sbjct: 1114 SERRRFAAERHRAMDHKKQEAEEARRADEERRRLEEEVRRERAAKTK 1160


>AF016674-1|AAB66132.1|  160|Caenorhabditis elegans Hypothetical
           protein C03H5.4 protein.
          Length = 160

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 152 HSSCILQNLSLN-SCLHTPGEVCPLFSPSCKTENISC 45
           H  C  ++L L  +C  TP E  P++S  C+ + I C
Sbjct: 64  HDKCY-EDLDLKKTCWTTPFEYFPIYSWKCQNQTIHC 99


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
           protein F59E12.9 protein.
          Length = 1621

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +2

Query: 401 SEGRSQPSTETAKTIRTKRLLQNPGRQEDGDENKRSQGRTGRQRRK 538
           S+  S   + ++K  R+KR L+N   ++ GD+ K  + +  +++ +
Sbjct: 86  SDSDSADFSSSSKRKRSKRALENDSDEDVGDDGKEEEMKKKKEKEE 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,697,804
Number of Sequences: 27780
Number of extensions: 200084
Number of successful extensions: 811
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)