Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30823
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03160.1 68418.m00264 DNAJ heat shock N-terminal domain-conta...    41   5e-04
At4g12400.1 68417.m01960 stress-inducible protein, putative simi...    31   0.54 
At2g34270.1 68415.m04193 hypothetical protein  and genscan             31   0.71 
At4g30480.2 68417.m04328 tetratricopeptide repeat (TPR)-containi...    30   0.94 
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    30   1.2  
At5g58610.1 68418.m07345 PHD finger transcription factor, putative     29   2.2  
At5g10060.1 68418.m01165 expressed protein                             29   2.2  
At1g62740.1 68414.m07081 stress-inducible protein, putative simi...    29   2.2  
At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF0051...    29   2.9  
At3g33530.1 68416.m04290 transducin family protein / WD-40 repea...    28   3.8  
At2g32980.1 68415.m04042 expressed protein                             27   6.6  
At2g21560.1 68415.m02566 expressed protein contains weak similar...    27   6.6  
At4g34310.2 68417.m04876 expressed protein                             27   8.7  
At4g34310.1 68417.m04877 expressed protein                             27   8.7  
At1g29570.1 68414.m03616 zinc finger protein-related contains si...    27   8.7  

>At5g03160.1 68418.m00264 DNAJ heat shock N-terminal
           domain-containing protein similar to P58 protein, Bos
           primigenius taurus, PIR:A56534; similar to p58
           (GI:1353270) {Homo sapiens}; contains Pfam PF00226: DnaJ
           domain; contains Pfam PF00515: TPR Domain
          Length = 482

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 19/53 (35%), Positives = 34/53 (64%)
 Frame = +3

Query: 336 EMYDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQRDYYKILGVKRTAT 494
           E ++ A+   K+A +  +  +   E L +A+K  K S+++D+YKILG+ RTA+
Sbjct: 331 EDWEGAVEDLKQAAQNSQDME-IHESLGKAEKALKMSKRKDWYKILGISRTAS 382


>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 530

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 342 YDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQRDY 461
           +D+A+ +YK+ LE+D   +  K GL+ A + +  S+   +
Sbjct: 86  FDEAVDSYKKGLEIDPSNEMLKSGLADASRSRVSSKSNPF 125


>At2g34270.1 68415.m04193 hypothetical protein  and genscan
          Length = 374

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +3

Query: 426 QKLQKQSEQRDYYKILGVKRTATKTRDHKGVQEGSAESGTR 548
           +++ K++++ D  +I  +  + TKTR HK +Q+ S+ S  +
Sbjct: 110 ERIVKRNQESDVREIFKIAASRTKTRFHKALQKESSSSSMK 150


>At4g30480.2 68417.m04328 tetratricopeptide repeat (TPR)-containing
           protein similar to SP|Q99614 Tetratricopeptide repeat
           protein 1 {Homo sapiens}; contains Pfam profile PF00515:
           TPR Domain
          Length = 277

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 336 EMYDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQR 455
           E ++DA+   K+ LELD    +A++G+ R + L  +  ++
Sbjct: 194 EHFEDAVTDLKKILELDPSNDQARKGIRRLEPLAAEKREK 233


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; contains TIGRFAM TIGR00864:
            polycystin cation channel protein; similar to
            fimbriae-associated protein Fap1 [Streptococcus
            parasanguinis] (GI:3929312)
          Length = 1498

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 406  RKVSAEHRNCKNNPNKEIITKSWASRGRRRKQEITRAY 519
            RK +++ RNC  NP  +  +K    RG    +EI++ +
Sbjct: 1321 RKPNSDSRNCSRNPKGDRNSKETNRRGESTNEEISQTF 1358


>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
          Length = 1065

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +1

Query: 136 RMHEECFRCPARRDRSHSGDLRGPKWLCSCAVKEELYSEAWGTAAARWSCAATRDC 303
           + H  C R     D      + G KW CS   +E L    +G  A++   AA   C
Sbjct: 767 KYHPSCLRYDGACDSLDK--ILGEKWFCSKDCEESLEPNMYGDDASKIEAAAENHC 820


>At5g10060.1 68418.m01165 expressed protein
          Length = 469

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 348 DAIRAYKEALE-LDEGFQRAKEGLSRAQKLQKQSEQRDY-YKILGVKRTATKTRDH 509
           DA+R  +  L+ L    Q AKE    AQ +QK+    DY  K      T T+T D+
Sbjct: 257 DALREQESELDNLKAQIQVAKEQTEEAQNMQKRLNDEDYTSKQTTAATTITETNDN 312


>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 571

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 342 YDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQS 446
           +D+A+ AY + LE+D   +  K GL+ A+    +S
Sbjct: 86  FDEAVEAYSKGLEIDPSNEGLKSGLADAKASASRS 120


>At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF00515:
           TPR Domain; similar to ferredoxin PetF2 (GI:22651984)
           [Synechococcus sp. PCC 7002]
          Length = 366

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 342 YDDAIRAYKEALELDEGFQRAKEGLSRAQKLQKQSEQRD 458
           YD A ++Y   LE+D   +R+K   +R  KLQ++  + D
Sbjct: 326 YDLAEKSYLTCLEIDPSLRRSKPFKARIAKLQQKVVELD 364


>At3g33530.1 68416.m04290 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 11
           (SP:Q9BZH6) {Homo sapiens}; contains Pfam PF00400: WD
           domain, G-beta repeat (4 copies, 3
           weak)|2763187|gb|T46504.1|T46504
          Length = 1345

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 509 VISCFRRRPLDAQDFVIISLFGLFL 435
           ++SC RR P D++ F ++ L G  L
Sbjct: 173 ILSCLRRDPYDSRHFCVLGLKGFLL 197


>At2g32980.1 68415.m04042 expressed protein
          Length = 296

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +2

Query: 404 EGRSQPSTETAKTIRTKRLLQNPGRQEDGDENKRSQGRTGRQRRKWHP 547
           +GR + S +     +T+R   +   +E+ +E +      G +R  W P
Sbjct: 242 QGRIESSFDDLAVHKTRRQNNDQNEEEEEEEEEEDGNNNGNRRLSWPP 289


>At2g21560.1 68415.m02566 expressed protein contains weak similarity
           to reticulocyte-binding protein 2 homolog A [Plasmodium
           falciparum] gi|9754767|gb|AAF98066
          Length = 274

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 395 SASEGRSQPSTETAKTIRTKRLLQNPGRQEDGDENKRSQGRTGRQRR 535
           S SE R++ STE  +    K  +   GRQ  GDE+++      +QR+
Sbjct: 157 SMSENRAKQSTEEKREKLKKSEIS--GRQSSGDESEKKDITVKKQRQ 201


>At4g34310.2 68417.m04876 expressed protein 
          Length = 1035

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 414 LSRAQKLQKQSEQRDYYKILGVKRTATKTRDHKGVQEGSAES 539
           + R+ K QK   ++  + +   + +A KTR HK VQEG +++
Sbjct: 507 VDRSDKAQKMVMEKGLHLM---RDSARKTRKHKAVQEGLSKA 545


>At4g34310.1 68417.m04877 expressed protein 
          Length = 1228

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 414 LSRAQKLQKQSEQRDYYKILGVKRTATKTRDHKGVQEGSAES 539
           + R+ K QK   ++  + +   + +A KTR HK VQEG +++
Sbjct: 507 VDRSDKAQKMVMEKGLHLM---RDSARKTRKHKAVQEGLSKA 545


>At1g29570.1 68414.m03616 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 321

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 398 ASEGRSQPSTETAKTIRTKRLLQNPGRQEDGDENKRSQGRTGRQRRKWHP 547
           A  G +Q   E        R ++ P  +ED DEN + Q ++  + R+  P
Sbjct: 2   ADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSP 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,135,850
Number of Sequences: 28952
Number of extensions: 183236
Number of successful extensions: 736
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)