Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30822
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    31   0.18 
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    28   1.7  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   6.7  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    26   6.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   6.7  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   6.7  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   8.9  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   8.9  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.9  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 301 GGPIMDLECRENFLSTKRRRDGTSWGDSFHTYSVQWTPDFIALSVDGEEWARVEAPRDAL 480
           GGP+  +   +N     R RD   WG+  +  +   T D  A+   G EW + E   DA+
Sbjct: 363 GGPLETVIDGKN--GWLRPRDAKIWGNVIYEATTSTTYDTAAMGEAGSEWVKNEFSTDAM 420


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 606 GSITLPGESPSPGEEK 653
           G+  LPG++P PGEEK
Sbjct: 952 GNFYLPGKNPEPGEEK 967


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 269 PEYSSHYRARTLSSLRRTHNSYFHTSLRTAPIEFPDTASLLAVISL 132
           P  SS +R+ T   +   HN +F   +RT  I    T S   VI L
Sbjct: 63  PSVSSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIIL 108


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = -1

Query: 405 LNGICMKTVAPRRAVSASFCGEKVLAALQIHDRSSVQNRIAVVIRSGIQFSLPRAHAIFT 226
           L+ I   T  P  + S S+  E  L+  Q+ D ++  N + + + S +  +LP   A + 
Sbjct: 10  LSLILSDTAFPLSSFSYSYGLESYLSHQQVRDVNAFFNFLPLSLNSVLHTNLPTVKAAWE 69

Query: 225 TPDA*FILPYFFKN 184
           +P     +  FF++
Sbjct: 70  SPQQYSEIEDFFES 83


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 650 KAPRKGI-RTFLAGTLSHLGSQRVGLNPTFN 739
           KA RK + RTF    LSH  S R  L PT N
Sbjct: 647 KAIRKDLDRTFAPEILSHFFSNRQQLEPTDN 677


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 257 SHYRARTLSSLRRTHNSYFHTSLRTAPIEFPDTASLLAVISL 132
           +H   R+  SL  T+N    TSLR +PI      SL +V S+
Sbjct: 770 NHAYLRSHVSLFETYNDDEATSLRPSPIRLLSQKSLASVSSV 811


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 269 PEYSSHYRARTLSSLRRTHNSYFHTSLRTAPIEFPDTASLLAVISL 132
           P  SS +R+ T   +   HN +F   +RT  I    T S   VI L
Sbjct: 63  PSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIIL 108


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 269 PEYSSHYRARTLSSLRRTHNSYFHTSLRTAPIEFPDTASLLAVISL 132
           P  SS +R+ T   +   HN +F   +RT  I    T S   VI L
Sbjct: 63  PSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIIL 108


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 269 PEYSSHYRARTLSSLRRTHNSYFHTSLRTAPIEFPDTASLLAVISL 132
           P  SS +R+ T   +   HN +F   +RT  I    T S   VI L
Sbjct: 63  PSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIIL 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,620
Number of Sequences: 5004
Number of extensions: 70453
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)