BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30822 (762 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 31 0.18 SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 28 1.7 SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 6.7 SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces... 26 6.7 SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 6.7 SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 6.7 SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 8.9 SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 8.9 SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9 >SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit Alg2|Schizosaccharomyces pombe|chr 2|||Manual Length = 511 Score = 31.1 bits (67), Expect = 0.18 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = +1 Query: 301 GGPIMDLECRENFLSTKRRRDGTSWGDSFHTYSVQWTPDFIALSVDGEEWARVEAPRDAL 480 GGP+ + +N R RD WG+ + + T D A+ G EW + E DA+ Sbjct: 363 GGPLETVIDGKN--GWLRPRDAKIWGNVIYEATTSTTYDTAAMGEAGSEWVKNEFSTDAM 420 >SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1014 Score = 27.9 bits (59), Expect = 1.7 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +3 Query: 606 GSITLPGESPSPGEEK 653 G+ LPG++P PGEEK Sbjct: 952 GNFYLPGKNPEPGEEK 967 >SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual Length = 146 Score = 25.8 bits (54), Expect = 6.7 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = -2 Query: 269 PEYSSHYRARTLSSLRRTHNSYFHTSLRTAPIEFPDTASLLAVISL 132 P SS +R+ T + HN +F +RT I T S VI L Sbjct: 63 PSVSSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIIL 108 >SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces pombe|chr 1|||Manual Length = 235 Score = 25.8 bits (54), Expect = 6.7 Identities = 18/74 (24%), Positives = 35/74 (47%) Frame = -1 Query: 405 LNGICMKTVAPRRAVSASFCGEKVLAALQIHDRSSVQNRIAVVIRSGIQFSLPRAHAIFT 226 L+ I T P + S S+ E L+ Q+ D ++ N + + + S + +LP A + Sbjct: 10 LSLILSDTAFPLSSFSYSYGLESYLSHQQVRDVNAFFNFLPLSLNSVLHTNLPTVKAAWE 69 Query: 225 TPDA*FILPYFFKN 184 +P + FF++ Sbjct: 70 SPQQYSEIEDFFES 83 >SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1031 Score = 25.8 bits (54), Expect = 6.7 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Frame = +2 Query: 650 KAPRKGI-RTFLAGTLSHLGSQRVGLNPTFN 739 KA RK + RTF LSH S R L PT N Sbjct: 647 KAIRKDLDRTFAPEILSHFFSNRQQLEPTDN 677 >SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1023 Score = 25.8 bits (54), Expect = 6.7 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -2 Query: 257 SHYRARTLSSLRRTHNSYFHTSLRTAPIEFPDTASLLAVISL 132 +H R+ SL T+N TSLR +PI SL +V S+ Sbjct: 770 NHAYLRSHVSLFETYNDDEATSLRPSPIRLLSQKSLASVSSV 811 >SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosaccharomyces pombe|chr 1|||Manual Length = 146 Score = 25.4 bits (53), Expect = 8.9 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = -2 Query: 269 PEYSSHYRARTLSSLRRTHNSYFHTSLRTAPIEFPDTASLLAVISL 132 P SS +R+ T + HN +F +RT I T S VI L Sbjct: 63 PSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIIL 108 >SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual Length = 146 Score = 25.4 bits (53), Expect = 8.9 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = -2 Query: 269 PEYSSHYRARTLSSLRRTHNSYFHTSLRTAPIEFPDTASLLAVISL 132 P SS +R+ T + HN +F +RT I T S VI L Sbjct: 63 PSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIIL 108 >SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 146 Score = 25.4 bits (53), Expect = 8.9 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = -2 Query: 269 PEYSSHYRARTLSSLRRTHNSYFHTSLRTAPIEFPDTASLLAVISL 132 P SS +R+ T + HN +F +RT I T S VI L Sbjct: 63 PSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIIL 108 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,321,620 Number of Sequences: 5004 Number of extensions: 70453 Number of successful extensions: 203 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 199 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 202 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 365309308 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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