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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30822
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695     32   0.43 
11_05_0013 + 18383235-18383702,18385570-18386571                       32   0.57 
04_02_0006 + 8455219-8457469,8457560-8457924                           31   1.0  
08_01_0869 + 8487518-8487697,8487792-8488127,8488211-8488410,848...    31   1.3  
06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711     31   1.3  
06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597     31   1.3  
04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846     30   1.7  
10_08_0042 - 14383143-14383628,14383647-14384609,14384697-143864...    30   2.3  
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877...    30   2.3  
04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411     29   3.1  
04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122     29   4.0  
07_01_0007 - 47999-48379,48496-48711,48794-48918,49031-49220,494...    29   5.3  
04_01_0470 - 6062054-6062134,6062262-6062528,6062578-6062583           29   5.3  
03_05_0472 - 24655384-24655764,24655904-24656119,24656197-246563...    29   5.3  
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94...    29   5.3  
06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103     28   9.3  
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93...    28   9.3  

>06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695
          Length = 293

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 382 SFHTYSVQWTPDFIALSVDG 441
           SFHTYS+ W P  +  +VDG
Sbjct: 138 SFHTYSIIWNPQHVIFAVDG 157


>11_05_0013 + 18383235-18383702,18385570-18386571
          Length = 489

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 294 NRIAVVIRSGIQFSLPRAHAIFTTPDA*FILPYFFKN 184
           N  +V  + G +F +P+ H + T+P     LP+ FKN
Sbjct: 361 NDFSVTTKDGKEFDIPKGHIVATSPAFANRLPHIFKN 397


>04_02_0006 + 8455219-8457469,8457560-8457924
          Length = 871

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 195 FFKNGSNRISGYSQSPCGNFALISTVPYVNANPIDVILPLTIG 67
           +FK G N+ISG      GN   + T+  +N+N +   +PLTIG
Sbjct: 202 WFKFGGNQISGRIPDELGNLVNL-TLLDINSNMLSGEIPLTIG 243


>08_01_0869 +
           8487518-8487697,8487792-8488127,8488211-8488410,
           8488586-8488973
          Length = 367

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 379 DSFHTYSVQWTPDFIALSVDG 441
           + FHTY++ W P  I + VDG
Sbjct: 224 EDFHTYTIIWNPQMILILVDG 244


>06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711
          Length = 288

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 385 FHTYSVQWTPDFIALSVDG 441
           FHTYSV W P  I   VDG
Sbjct: 148 FHTYSVLWNPSHILFYVDG 166


>06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597
          Length = 299

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 349 KRRRDGTSWGD---SFHTYSVQWTPDFIALSVDG 441
           +R +    W D    FHTYS+ W P  I L +DG
Sbjct: 137 EREQQFVLWFDPTADFHTYSILWNPHNIILYIDG 170


>04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846
          Length = 293

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 385 FHTYSVQWTPDFIALSVD 438
           FHTYSV W PD I + VD
Sbjct: 150 FHTYSVIWNPDEILILVD 167


>10_08_0042 -
           14383143-14383628,14383647-14384609,14384697-14386443,
           14387901-14388010,14388767-14389003
          Length = 1180

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 570 GVAAGGITEFRDGSITLPGESPSPGEEKRLGRASV 674
           GV  G     R   ++ PG SPS   ++R+GRA V
Sbjct: 144 GVLGGSPPSSRTAGVSSPGLSPSRPSKRRIGRARV 178


>10_05_0068 +
           8774712-8774787,8774812-8774852,8774895-8775743,
           8776210-8776582,8776814-8777484
          Length = 669

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 310 IMDLECRENFLSTKRRRDGTSWGDSFHTYSVQWTPDFIA---LSVDGEEWARVEAPRDAL 480
           + DL+  E    +KR+R   S+GD F  Y +  TP  I+    S D + W   EA R  +
Sbjct: 319 LTDLDVSEAPRRSKRQRTAKSFGDDFTVYLMDDTPKSISEAYASPDADYWK--EAVRSEM 376

Query: 481 PAV 489
            ++
Sbjct: 377 DSI 379


>04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411
          Length = 273

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 385 FHTYSVQWTPDFIALSVDG 441
           FHTYS+ WT   I + VDG
Sbjct: 142 FHTYSIVWTSQHILVLVDG 160


>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
          Length = 294

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 385 FHTYSVQWTPDFIALSVDGE 444
           +HTYS+ W P  I + VDG+
Sbjct: 154 YHTYSIVWNPKRILILVDGK 173


>07_01_0007 -
           47999-48379,48496-48711,48794-48918,49031-49220,
           49465-49559,49807-49954
          Length = 384

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 53  ADILPPIVSGRITSIGFAFTYGTVEIRAKLPQGDWLY 163
           A I PP+V     ++ F FT G++ + A    G W Y
Sbjct: 187 ATIRPPVVKNMEKALWFQFTVGSLPLYAVTFMGYWAY 223


>04_01_0470 - 6062054-6062134,6062262-6062528,6062578-6062583
          Length = 117

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 543 NGAHLRAGLQQVPRGVRADSRQGVPWRLHSRPLLAVYR 430
           +G + R   +  PR   A SR G PW  H    L  +R
Sbjct: 67  SGCNARVTWEMAPRETLAASRSGSPWSAHDEVSLGDHR 104


>03_05_0472 -
           24655384-24655764,24655904-24656119,24656197-24656321,
           24656432-24656621,24656817-24656911,24657230-24657454,
           24657940-24658003
          Length = 431

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 53  ADILPPIVSGRITSIGFAFTYGTVEIRAKLPQGDWLY 163
           A I PP+V     ++ F FT G++ + A    G W Y
Sbjct: 234 ATIRPPVVKNMEKALWFQFTVGSLPLYAVTFMGYWAY 270


>03_01_0121 +
           940338-940637,941023-941324,941417-941969,943889-944848
          Length = 704

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 379 DSFHTYSVQWTPDFIALSVDGEEWARVE 462
           D FH Y++ W  D I   +DGE   R E
Sbjct: 533 DGFHHYAIAWGADAIEWRIDGELIRREE 560


>06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103
          Length = 290

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 385 FHTYSVQWTPDFIALSVD 438
           FHTYS+ W P  I   VD
Sbjct: 137 FHTYSILWNPKHIIFMVD 154


>02_01_0129 -
           934865-935152,935241-935490,935965-936105,937175-937707
          Length = 403

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -2

Query: 704 PNGTMCPPEMYGCPSEALFFSRAW*LPREGYRPVAELRYASCR 576
           P     PP +Y   S   F   AW  PR    PVA L +A  R
Sbjct: 56  PTREPLPPPLY--TSSCPFHRNAWNCPRNSRPPVAALSWAPAR 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,523,520
Number of Sequences: 37544
Number of extensions: 542702
Number of successful extensions: 1691
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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