Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30822
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695 32 0.43
11_05_0013 + 18383235-18383702,18385570-18386571 32 0.57
04_02_0006 + 8455219-8457469,8457560-8457924 31 1.0
08_01_0869 + 8487518-8487697,8487792-8488127,8488211-8488410,848... 31 1.3
06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711 31 1.3
06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 31 1.3
04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846 30 1.7
10_08_0042 - 14383143-14383628,14383647-14384609,14384697-143864... 30 2.3
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 30 2.3
04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411 29 3.1
04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122 29 4.0
07_01_0007 - 47999-48379,48496-48711,48794-48918,49031-49220,494... 29 5.3
04_01_0470 - 6062054-6062134,6062262-6062528,6062578-6062583 29 5.3
03_05_0472 - 24655384-24655764,24655904-24656119,24656197-246563... 29 5.3
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94... 29 5.3
06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103 28 9.3
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93... 28 9.3
>06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695
Length = 293
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 382 SFHTYSVQWTPDFIALSVDG 441
SFHTYS+ W P + +VDG
Sbjct: 138 SFHTYSIIWNPQHVIFAVDG 157
>11_05_0013 + 18383235-18383702,18385570-18386571
Length = 489
Score = 31.9 bits (69), Expect = 0.57
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 294 NRIAVVIRSGIQFSLPRAHAIFTTPDA*FILPYFFKN 184
N +V + G +F +P+ H + T+P LP+ FKN
Sbjct: 361 NDFSVTTKDGKEFDIPKGHIVATSPAFANRLPHIFKN 397
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -1
Query: 195 FFKNGSNRISGYSQSPCGNFALISTVPYVNANPIDVILPLTIG 67
+FK G N+ISG GN + T+ +N+N + +PLTIG
Sbjct: 202 WFKFGGNQISGRIPDELGNLVNL-TLLDINSNMLSGEIPLTIG 243
>08_01_0869 +
8487518-8487697,8487792-8488127,8488211-8488410,
8488586-8488973
Length = 367
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 379 DSFHTYSVQWTPDFIALSVDG 441
+ FHTY++ W P I + VDG
Sbjct: 224 EDFHTYTIIWNPQMILILVDG 244
>06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711
Length = 288
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 385 FHTYSVQWTPDFIALSVDG 441
FHTYSV W P I VDG
Sbjct: 148 FHTYSVLWNPSHILFYVDG 166
>06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597
Length = 299
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +1
Query: 349 KRRRDGTSWGD---SFHTYSVQWTPDFIALSVDG 441
+R + W D FHTYS+ W P I L +DG
Sbjct: 137 EREQQFVLWFDPTADFHTYSILWNPHNIILYIDG 170
>04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846
Length = 293
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 385 FHTYSVQWTPDFIALSVD 438
FHTYSV W PD I + VD
Sbjct: 150 FHTYSVIWNPDEILILVD 167
>10_08_0042 -
14383143-14383628,14383647-14384609,14384697-14386443,
14387901-14388010,14388767-14389003
Length = 1180
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 570 GVAAGGITEFRDGSITLPGESPSPGEEKRLGRASV 674
GV G R ++ PG SPS ++R+GRA V
Sbjct: 144 GVLGGSPPSSRTAGVSSPGLSPSRPSKRRIGRARV 178
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 310 IMDLECRENFLSTKRRRDGTSWGDSFHTYSVQWTPDFIA---LSVDGEEWARVEAPRDAL 480
+ DL+ E +KR+R S+GD F Y + TP I+ S D + W EA R +
Sbjct: 319 LTDLDVSEAPRRSKRQRTAKSFGDDFTVYLMDDTPKSISEAYASPDADYWK--EAVRSEM 376
Query: 481 PAV 489
++
Sbjct: 377 DSI 379
>04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411
Length = 273
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 385 FHTYSVQWTPDFIALSVDG 441
FHTYS+ WT I + VDG
Sbjct: 142 FHTYSIVWTSQHILVLVDG 160
>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
Length = 294
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 385 FHTYSVQWTPDFIALSVDGE 444
+HTYS+ W P I + VDG+
Sbjct: 154 YHTYSIVWNPKRILILVDGK 173
>07_01_0007 -
47999-48379,48496-48711,48794-48918,49031-49220,
49465-49559,49807-49954
Length = 384
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 53 ADILPPIVSGRITSIGFAFTYGTVEIRAKLPQGDWLY 163
A I PP+V ++ F FT G++ + A G W Y
Sbjct: 187 ATIRPPVVKNMEKALWFQFTVGSLPLYAVTFMGYWAY 223
>04_01_0470 - 6062054-6062134,6062262-6062528,6062578-6062583
Length = 117
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 543 NGAHLRAGLQQVPRGVRADSRQGVPWRLHSRPLLAVYR 430
+G + R + PR A SR G PW H L +R
Sbjct: 67 SGCNARVTWEMAPRETLAASRSGSPWSAHDEVSLGDHR 104
>03_05_0472 -
24655384-24655764,24655904-24656119,24656197-24656321,
24656432-24656621,24656817-24656911,24657230-24657454,
24657940-24658003
Length = 431
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 53 ADILPPIVSGRITSIGFAFTYGTVEIRAKLPQGDWLY 163
A I PP+V ++ F FT G++ + A G W Y
Sbjct: 234 ATIRPPVVKNMEKALWFQFTVGSLPLYAVTFMGYWAY 270
>03_01_0121 +
940338-940637,941023-941324,941417-941969,943889-944848
Length = 704
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 379 DSFHTYSVQWTPDFIALSVDGEEWARVE 462
D FH Y++ W D I +DGE R E
Sbjct: 533 DGFHHYAIAWGADAIEWRIDGELIRREE 560
>06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103
Length = 290
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 385 FHTYSVQWTPDFIALSVD 438
FHTYS+ W P I VD
Sbjct: 137 FHTYSILWNPKHIIFMVD 154
>02_01_0129 -
934865-935152,935241-935490,935965-936105,937175-937707
Length = 403
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -2
Query: 704 PNGTMCPPEMYGCPSEALFFSRAW*LPREGYRPVAELRYASCR 576
P PP +Y S F AW PR PVA L +A R
Sbjct: 56 PTREPLPPPLY--TSSCPFHRNAWNCPRNSRPPVAALSWAPAR 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,523,520
Number of Sequences: 37544
Number of extensions: 542702
Number of successful extensions: 1691
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -