BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30822 (762 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695 32 0.43 11_05_0013 + 18383235-18383702,18385570-18386571 32 0.57 04_02_0006 + 8455219-8457469,8457560-8457924 31 1.0 08_01_0869 + 8487518-8487697,8487792-8488127,8488211-8488410,848... 31 1.3 06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711 31 1.3 06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 31 1.3 04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846 30 1.7 10_08_0042 - 14383143-14383628,14383647-14384609,14384697-143864... 30 2.3 10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 30 2.3 04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411 29 3.1 04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122 29 4.0 07_01_0007 - 47999-48379,48496-48711,48794-48918,49031-49220,494... 29 5.3 04_01_0470 - 6062054-6062134,6062262-6062528,6062578-6062583 29 5.3 03_05_0472 - 24655384-24655764,24655904-24656119,24656197-246563... 29 5.3 03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94... 29 5.3 06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103 28 9.3 02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93... 28 9.3 >06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695 Length = 293 Score = 32.3 bits (70), Expect = 0.43 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +1 Query: 382 SFHTYSVQWTPDFIALSVDG 441 SFHTYS+ W P + +VDG Sbjct: 138 SFHTYSIIWNPQHVIFAVDG 157 >11_05_0013 + 18383235-18383702,18385570-18386571 Length = 489 Score = 31.9 bits (69), Expect = 0.57 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 294 NRIAVVIRSGIQFSLPRAHAIFTTPDA*FILPYFFKN 184 N +V + G +F +P+ H + T+P LP+ FKN Sbjct: 361 NDFSVTTKDGKEFDIPKGHIVATSPAFANRLPHIFKN 397 >04_02_0006 + 8455219-8457469,8457560-8457924 Length = 871 Score = 31.1 bits (67), Expect = 1.0 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = -1 Query: 195 FFKNGSNRISGYSQSPCGNFALISTVPYVNANPIDVILPLTIG 67 +FK G N+ISG GN + T+ +N+N + +PLTIG Sbjct: 202 WFKFGGNQISGRIPDELGNLVNL-TLLDINSNMLSGEIPLTIG 243 >08_01_0869 + 8487518-8487697,8487792-8488127,8488211-8488410, 8488586-8488973 Length = 367 Score = 30.7 bits (66), Expect = 1.3 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 379 DSFHTYSVQWTPDFIALSVDG 441 + FHTY++ W P I + VDG Sbjct: 224 EDFHTYTIIWNPQMILILVDG 244 >06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711 Length = 288 Score = 30.7 bits (66), Expect = 1.3 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = +1 Query: 385 FHTYSVQWTPDFIALSVDG 441 FHTYSV W P I VDG Sbjct: 148 FHTYSVLWNPSHILFYVDG 166 >06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 Length = 299 Score = 30.7 bits (66), Expect = 1.3 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = +1 Query: 349 KRRRDGTSWGD---SFHTYSVQWTPDFIALSVDG 441 +R + W D FHTYS+ W P I L +DG Sbjct: 137 EREQQFVLWFDPTADFHTYSILWNPHNIILYIDG 170 >04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846 Length = 293 Score = 30.3 bits (65), Expect = 1.7 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 385 FHTYSVQWTPDFIALSVD 438 FHTYSV W PD I + VD Sbjct: 150 FHTYSVIWNPDEILILVD 167 >10_08_0042 - 14383143-14383628,14383647-14384609,14384697-14386443, 14387901-14388010,14388767-14389003 Length = 1180 Score = 29.9 bits (64), Expect = 2.3 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 Query: 570 GVAAGGITEFRDGSITLPGESPSPGEEKRLGRASV 674 GV G R ++ PG SPS ++R+GRA V Sbjct: 144 GVLGGSPPSSRTAGVSSPGLSPSRPSKRRIGRARV 178 >10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743, 8776210-8776582,8776814-8777484 Length = 669 Score = 29.9 bits (64), Expect = 2.3 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = +1 Query: 310 IMDLECRENFLSTKRRRDGTSWGDSFHTYSVQWTPDFIA---LSVDGEEWARVEAPRDAL 480 + DL+ E +KR+R S+GD F Y + TP I+ S D + W EA R + Sbjct: 319 LTDLDVSEAPRRSKRQRTAKSFGDDFTVYLMDDTPKSISEAYASPDADYWK--EAVRSEM 376 Query: 481 PAV 489 ++ Sbjct: 377 DSI 379 >04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411 Length = 273 Score = 29.5 bits (63), Expect = 3.1 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 385 FHTYSVQWTPDFIALSVDG 441 FHTYS+ WT I + VDG Sbjct: 142 FHTYSIVWTSQHILVLVDG 160 >04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122 Length = 294 Score = 29.1 bits (62), Expect = 4.0 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +1 Query: 385 FHTYSVQWTPDFIALSVDGE 444 +HTYS+ W P I + VDG+ Sbjct: 154 YHTYSIVWNPKRILILVDGK 173 >07_01_0007 - 47999-48379,48496-48711,48794-48918,49031-49220, 49465-49559,49807-49954 Length = 384 Score = 28.7 bits (61), Expect = 5.3 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +2 Query: 53 ADILPPIVSGRITSIGFAFTYGTVEIRAKLPQGDWLY 163 A I PP+V ++ F FT G++ + A G W Y Sbjct: 187 ATIRPPVVKNMEKALWFQFTVGSLPLYAVTFMGYWAY 223 >04_01_0470 - 6062054-6062134,6062262-6062528,6062578-6062583 Length = 117 Score = 28.7 bits (61), Expect = 5.3 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = -1 Query: 543 NGAHLRAGLQQVPRGVRADSRQGVPWRLHSRPLLAVYR 430 +G + R + PR A SR G PW H L +R Sbjct: 67 SGCNARVTWEMAPRETLAASRSGSPWSAHDEVSLGDHR 104 >03_05_0472 - 24655384-24655764,24655904-24656119,24656197-24656321, 24656432-24656621,24656817-24656911,24657230-24657454, 24657940-24658003 Length = 431 Score = 28.7 bits (61), Expect = 5.3 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +2 Query: 53 ADILPPIVSGRITSIGFAFTYGTVEIRAKLPQGDWLY 163 A I PP+V ++ F FT G++ + A G W Y Sbjct: 234 ATIRPPVVKNMEKALWFQFTVGSLPLYAVTFMGYWAY 270 >03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-944848 Length = 704 Score = 28.7 bits (61), Expect = 5.3 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 379 DSFHTYSVQWTPDFIALSVDGEEWARVE 462 D FH Y++ W D I +DGE R E Sbjct: 533 DGFHHYAIAWGADAIEWRIDGELIRREE 560 >06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103 Length = 290 Score = 27.9 bits (59), Expect = 9.3 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +1 Query: 385 FHTYSVQWTPDFIALSVD 438 FHTYS+ W P I VD Sbjct: 137 FHTYSILWNPKHIIFMVD 154 >02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-937707 Length = 403 Score = 27.9 bits (59), Expect = 9.3 Identities = 16/43 (37%), Positives = 18/43 (41%) Frame = -2 Query: 704 PNGTMCPPEMYGCPSEALFFSRAW*LPREGYRPVAELRYASCR 576 P PP +Y S F AW PR PVA L +A R Sbjct: 56 PTREPLPPPLY--TSSCPFHRNAWNCPRNSRPPVAALSWAPAR 96 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,523,520 Number of Sequences: 37544 Number of extensions: 542702 Number of successful extensions: 1691 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1639 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1691 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 2039640244 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -