Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30822
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_285| Best HMM Match : DUF225 (HMM E-Value=7)                        29   5.5  
SB_44258| Best HMM Match : DUF1155 (HMM E-Value=8)                     28   9.5  
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)                     28   9.5  

>SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 728 GLIPPVGNPNGTMCPPEMYGCPS 660
           GL+ PVG P+ ++CPP+ +  P+
Sbjct: 504 GLVLPVGGPHLSVCPPQTHTTPT 526


>SB_285| Best HMM Match : DUF225 (HMM E-Value=7)
          Length = 150

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 355 RRDGTSWGDSFHTYSVQWTPDFIALSVDGEEWARVEAPR-DALPAVCAHAPR 507
           R DG SW  S  T     + +  A   DG  W+   A R D +   C+HA R
Sbjct: 58  RGDGMSWSCSHATRGDGMSSNSHATRGDGMSWSCSHATRGDGMSWSCSHATR 109


>SB_44258| Best HMM Match : DUF1155 (HMM E-Value=8)
          Length = 238

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 618 LPGESPSPGEEKRLGRASVHFWR 686
           L G  PSP E+ +  R+  H+WR
Sbjct: 16  LEGRFPSPDEQPQAYRSMAHYWR 38


>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
          Length = 1444

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -1

Query: 459  HSRPLLAVY-RQGYEIRCPLNGICMKTVAPRRAVSASFCGEKVLAALQIHDRSSVQNRIA 283
            H  PL +VY R G  I  PL+G+C+   AP+       C + +L ++    R  V    +
Sbjct: 1213 HIDPLRSVYTRSGPHID-PLSGLCL--AAPQHVAKVVNCFQALLCSVYDSQRIVVSAFFS 1269

Query: 282  VVIRSGIQFSLPRAHA 235
             +I+  +   L R+ A
Sbjct: 1270 ELIKPNLNSVLIRSTA 1285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,172,111
Number of Sequences: 59808
Number of extensions: 578830
Number of successful extensions: 1831
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)