BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30822 (762 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g25810.1 68417.m03713 xyloglucan:xyloglucosyl transferase, pu... 32 0.48 At2g13290.2 68415.m01465 glycosyl transferase family 17 protein ... 31 0.84 At2g13290.1 68415.m01464 glycosyl transferase family 17 protein ... 31 0.84 At5g19940.1 68418.m02372 plastid-lipid associated protein PAP-re... 31 1.1 At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) / endo... 30 1.5 At5g57560.1 68418.m07191 xyloglucan:xyloglucosyl transferase / x... 30 1.9 At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase, pu... 29 2.6 At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase, pu... 29 2.6 At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 2.6 At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase, pu... 29 2.6 At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase, pu... 29 3.4 At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase / x... 29 4.5 At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase / x... 28 5.9 At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 28 5.9 At5g52410.2 68418.m06502 expressed protein 28 7.8 At5g52410.1 68418.m06503 expressed protein 28 7.8 At4g14130.1 68417.m02180 xyloglucan:xyloglucosyl transferase, pu... 28 7.8 >At4g25810.1 68417.m03713 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (XTR6) identical to xyloglucan endotransglycosylase-related protein GI:1244758 from [Arabidopsis thaliana] Length = 286 Score = 31.9 bits (69), Expect = 0.48 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +1 Query: 385 FHTYSVQWTPDFIALSVDG 441 FHTYS+ W P I SVDG Sbjct: 142 FHTYSILWNPQRIIFSVDG 160 >At2g13290.2 68415.m01465 glycosyl transferase family 17 protein low similarity to beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144) from Mus musculus [SP|Q10470], Rattus norvegicus [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam profile PF04724 :Glycosyltransferase family 17 Length = 361 Score = 31.1 bits (67), Expect = 0.84 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +1 Query: 310 IMDLECRENFLSTKRRRDGTSWGDSFHTYSVQWT 411 +M LE RE S + D +SW S H YS +WT Sbjct: 213 VMHLEMREYMYSFEFPVDYSSWRASVHIYSRKWT 246 >At2g13290.1 68415.m01464 glycosyl transferase family 17 protein low similarity to beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144) from Mus musculus [SP|Q10470], Rattus norvegicus [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam profile PF04724 :Glycosyltransferase family 17 Length = 361 Score = 31.1 bits (67), Expect = 0.84 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +1 Query: 310 IMDLECRENFLSTKRRRDGTSWGDSFHTYSVQWT 411 +M LE RE S + D +SW S H YS +WT Sbjct: 213 VMHLEMREYMYSFEFPVDYSSWRASVHIYSRKWT 246 >At5g19940.1 68418.m02372 plastid-lipid associated protein PAP-related / fibrillin-related weak hit to Pfam profile PF04755: PAP_fibrillin Length = 239 Score = 30.7 bits (66), Expect = 1.1 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +2 Query: 65 PPIVSGRITSIGFAFTYGTVEIRAKLPQGDWLYPEILLEPFLKKYGSMNYASG 223 P IV +++ F F G V + KL D + +++ EP K GS+ + G Sbjct: 154 PDIVRNKVSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYG 206 >At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) / endo-xyloglucan transferase / xyloglucan endo-1,4-beta-D-glucanase (SEN4) identical to endo-xyloglucan transferase gi:944810, SP|P24806 MERI-5 protein precursor (Endo-xyloglucan transferase) (Xyloglucan endo-1,4-beta-D-glucanase) {Arabidopsis thaliana} Length = 269 Score = 30.3 bits (65), Expect = 1.5 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +1 Query: 382 SFHTYSVQWTPDFIALSVD 438 +FHTYS+ W P I L+VD Sbjct: 139 NFHTYSILWNPQRIILTVD 157 >At5g57560.1 68418.m07191 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (TCH4) identical to xyloglucan endotransglycosylase TCH4 protein GI:886116 Length = 284 Score = 29.9 bits (64), Expect = 1.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +1 Query: 382 SFHTYSVQWTPDFIALSVDG 441 +FHTY++ W P I +VDG Sbjct: 138 NFHTYTILWNPQRIIFTVDG 157 >At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative similar to xyloglucan endotransglycosylase TCH4 GI:886116 from [Arabidopsis thaliana] Length = 277 Score = 29.5 bits (63), Expect = 2.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 382 SFHTYSVQWTPDFIALSVDG 441 +FHTY + W P I +VDG Sbjct: 140 NFHTYCITWNPQRIIFTVDG 159 >At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative similar to xyloglucan endotransglycosylase TCH4 GI:886116 from [Arabidopsis thaliana] Length = 282 Score = 29.5 bits (63), Expect = 2.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 382 SFHTYSVQWTPDFIALSVDG 441 +FHTY + W P I +VDG Sbjct: 145 NFHTYCITWNPQRIIFTVDG 164 >At2g29210.1 68415.m03550 splicing factor PWI domain-containing protein contains Pfam profile PF01480: PWI domain Length = 878 Score = 29.5 bits (63), Expect = 2.6 Identities = 21/69 (30%), Positives = 32/69 (46%) Frame = -1 Query: 543 NGAHLRAGLQQVPRGVRADSRQGVPWRLHSRPLLAVYRQGYEIRCPLNGICMKTVAPRRA 364 NG + + G RAD + GV R R L R+G R PL G ++++ + Sbjct: 169 NGMDAKPSRDRPEDGRRADEKNGVKER---RRDLIPPRRGDASRSPLRGSRSRSISKTNS 225 Query: 363 VSASFCGEK 337 S S+ GE+ Sbjct: 226 GSKSYSGER 234 >At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative similar to xyloglucan endotransglycosylase TCH4 GI:886116 from [Arabidopsis thaliana] Length = 282 Score = 29.5 bits (63), Expect = 2.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 382 SFHTYSVQWTPDFIALSVDG 441 +FHTY + W P I +VDG Sbjct: 145 NFHTYCITWNPQRIIFTVDG 164 >At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative similar to xyloglucan endotransglycosylase TCH4 GI:886116 from [Arabidopsis thaliana] Length = 305 Score = 29.1 bits (62), Expect = 3.4 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +1 Query: 382 SFHTYSVQWTPDFIALSVDGE 444 +FH YS+ W P I +DG+ Sbjct: 143 AFHNYSILWNPSHIVFYIDGK 163 >At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (XTR3) identical to endoxyloglucan transferase GI:5533317 from [Arabidopsis thaliana] Length = 284 Score = 28.7 bits (61), Expect = 4.5 Identities = 11/18 (61%), Positives = 11/18 (61%) Frame = +1 Query: 385 FHTYSVQWTPDFIALSVD 438 FHTYSV W P I VD Sbjct: 146 FHTYSVLWNPHHIVFMVD 163 >At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (XTR9) identical to xyloglucan endotransglycosylase GI:4218963 from [Arabidopsis thaliana] Length = 287 Score = 28.3 bits (60), Expect = 5.9 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +1 Query: 385 FHTYSVQWTPDFIALSVDG 441 FHTY+V W P I VDG Sbjct: 146 FHTYTVHWNPVNIIFLVDG 164 >At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein contains Pfam domian PF00096: Zinc finger, C2H2 type Length = 302 Score = 28.3 bits (60), Expect = 5.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 Query: 340 ESSRGTPDP*SVLRTKPYCCSH*VRNTV 257 ES RGT S+LR YCC+ +N + Sbjct: 132 ESLRGTKSSSSILRLPCYCCAEGCKNNI 159 >At5g52410.2 68418.m06502 expressed protein Length = 761 Score = 27.9 bits (59), Expect = 7.8 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +1 Query: 424 ALSVDGEEWARVEAPRDALPAVCAH 498 A V GEE AR+EA A VCAH Sbjct: 444 AFEVVGEELARIEAEAMAENVVCAH 468 >At5g52410.1 68418.m06503 expressed protein Length = 510 Score = 27.9 bits (59), Expect = 7.8 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +1 Query: 424 ALSVDGEEWARVEAPRDALPAVCAH 498 A V GEE AR+EA A VCAH Sbjct: 193 AFEVVGEELARIEAEAMAENVVCAH 217 >At4g14130.1 68417.m02180 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (XTR7) almost identical to xyloglucan endotransglycosylase-related protein XTR7 GI:1244760 from [Arabidopsis thaliana], one amino acid difference Length = 289 Score = 27.9 bits (59), Expect = 7.8 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 382 SFHTYSVQWTPDFIALSVD 438 +FHTYS+ W P I VD Sbjct: 143 NFHTYSIVWRPQHIIFLVD 161 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,943,970 Number of Sequences: 28952 Number of extensions: 393258 Number of successful extensions: 1116 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1082 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1116 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1702303248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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