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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30822
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25810.1 68417.m03713 xyloglucan:xyloglucosyl transferase, pu...    32   0.48 
At2g13290.2 68415.m01465 glycosyl transferase family 17 protein ...    31   0.84 
At2g13290.1 68415.m01464 glycosyl transferase family 17 protein ...    31   0.84 
At5g19940.1 68418.m02372 plastid-lipid associated protein PAP-re...    31   1.1  
At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) / endo...    30   1.5  
At5g57560.1 68418.m07191 xyloglucan:xyloglucosyl transferase / x...    30   1.9  
At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase, pu...    29   2.6  
At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase, pu...    29   2.6  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    29   2.6  
At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase, pu...    29   2.6  
At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase, pu...    29   3.4  
At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase / x...    29   4.5  
At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase / x...    28   5.9  
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ...    28   5.9  
At5g52410.2 68418.m06502 expressed protein                             28   7.8  
At5g52410.1 68418.m06503 expressed protein                             28   7.8  
At4g14130.1 68417.m02180 xyloglucan:xyloglucosyl transferase, pu...    28   7.8  

>At4g25810.1 68417.m03713 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative (XTR6) identical
           to xyloglucan endotransglycosylase-related protein
           GI:1244758 from [Arabidopsis thaliana]
          Length = 286

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 385 FHTYSVQWTPDFIALSVDG 441
           FHTYS+ W P  I  SVDG
Sbjct: 142 FHTYSILWNPQRIIFSVDG 160


>At2g13290.2 68415.m01465 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 361

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 310 IMDLECRENFLSTKRRRDGTSWGDSFHTYSVQWT 411
           +M LE RE   S +   D +SW  S H YS +WT
Sbjct: 213 VMHLEMREYMYSFEFPVDYSSWRASVHIYSRKWT 246


>At2g13290.1 68415.m01464 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 361

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 310 IMDLECRENFLSTKRRRDGTSWGDSFHTYSVQWT 411
           +M LE RE   S +   D +SW  S H YS +WT
Sbjct: 213 VMHLEMREYMYSFEFPVDYSSWRASVHIYSRKWT 246


>At5g19940.1 68418.m02372 plastid-lipid associated protein
           PAP-related / fibrillin-related weak hit to Pfam profile
           PF04755: PAP_fibrillin
          Length = 239

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 65  PPIVSGRITSIGFAFTYGTVEIRAKLPQGDWLYPEILLEPFLKKYGSMNYASG 223
           P IV  +++   F F  G V +  KL   D  + +++ EP   K GS+ +  G
Sbjct: 154 PDIVRNKVSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYG 206


>At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) /
           endo-xyloglucan transferase / xyloglucan
           endo-1,4-beta-D-glucanase (SEN4) identical to
           endo-xyloglucan transferase gi:944810, SP|P24806 MERI-5
           protein precursor (Endo-xyloglucan transferase)
           (Xyloglucan endo-1,4-beta-D-glucanase) {Arabidopsis
           thaliana}
          Length = 269

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 382 SFHTYSVQWTPDFIALSVD 438
           +FHTYS+ W P  I L+VD
Sbjct: 139 NFHTYSILWNPQRIILTVD 157


>At5g57560.1 68418.m07191 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (TCH4) identical to xyloglucan
           endotransglycosylase TCH4 protein GI:886116
          Length = 284

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 382 SFHTYSVQWTPDFIALSVDG 441
           +FHTY++ W P  I  +VDG
Sbjct: 138 NFHTYTILWNPQRIIFTVDG 157


>At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 277

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 382 SFHTYSVQWTPDFIALSVDG 441
           +FHTY + W P  I  +VDG
Sbjct: 140 NFHTYCITWNPQRIIFTVDG 159


>At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 282

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 382 SFHTYSVQWTPDFIALSVDG 441
           +FHTY + W P  I  +VDG
Sbjct: 145 NFHTYCITWNPQRIIFTVDG 164


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = -1

Query: 543 NGAHLRAGLQQVPRGVRADSRQGVPWRLHSRPLLAVYRQGYEIRCPLNGICMKTVAPRRA 364
           NG   +    +   G RAD + GV  R   R  L   R+G   R PL G   ++++   +
Sbjct: 169 NGMDAKPSRDRPEDGRRADEKNGVKER---RRDLIPPRRGDASRSPLRGSRSRSISKTNS 225

Query: 363 VSASFCGEK 337
            S S+ GE+
Sbjct: 226 GSKSYSGER 234


>At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 282

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 382 SFHTYSVQWTPDFIALSVDG 441
           +FHTY + W P  I  +VDG
Sbjct: 145 NFHTYCITWNPQRIIFTVDG 164


>At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 305

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 382 SFHTYSVQWTPDFIALSVDGE 444
           +FH YS+ W P  I   +DG+
Sbjct: 143 AFHNYSILWNPSHIVFYIDGK 163


>At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (XTR3) identical to endoxyloglucan
           transferase GI:5533317 from [Arabidopsis thaliana]
          Length = 284

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 385 FHTYSVQWTPDFIALSVD 438
           FHTYSV W P  I   VD
Sbjct: 146 FHTYSVLWNPHHIVFMVD 163


>At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (XTR9) identical to xyloglucan
           endotransglycosylase GI:4218963 from [Arabidopsis
           thaliana]
          Length = 287

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 385 FHTYSVQWTPDFIALSVDG 441
           FHTY+V W P  I   VDG
Sbjct: 146 FHTYTVHWNPVNIIFLVDG 164


>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
           contains Pfam domian PF00096: Zinc finger, C2H2 type
          Length = 302

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 340 ESSRGTPDP*SVLRTKPYCCSH*VRNTV 257
           ES RGT    S+LR   YCC+   +N +
Sbjct: 132 ESLRGTKSSSSILRLPCYCCAEGCKNNI 159


>At5g52410.2 68418.m06502 expressed protein
          Length = 761

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 424 ALSVDGEEWARVEAPRDALPAVCAH 498
           A  V GEE AR+EA   A   VCAH
Sbjct: 444 AFEVVGEELARIEAEAMAENVVCAH 468


>At5g52410.1 68418.m06503 expressed protein
          Length = 510

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 424 ALSVDGEEWARVEAPRDALPAVCAH 498
           A  V GEE AR+EA   A   VCAH
Sbjct: 193 AFEVVGEELARIEAEAMAENVVCAH 217


>At4g14130.1 68417.m02180 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative (XTR7) almost
           identical to xyloglucan endotransglycosylase-related
           protein XTR7 GI:1244760 from [Arabidopsis thaliana], one
           amino acid difference
          Length = 289

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 382 SFHTYSVQWTPDFIALSVD 438
           +FHTYS+ W P  I   VD
Sbjct: 143 NFHTYSIVWRPQHIIFLVD 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,943,970
Number of Sequences: 28952
Number of extensions: 393258
Number of successful extensions: 1116
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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