Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30822
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25810.1 68417.m03713 xyloglucan:xyloglucosyl transferase, pu... 32 0.48
At2g13290.2 68415.m01465 glycosyl transferase family 17 protein ... 31 0.84
At2g13290.1 68415.m01464 glycosyl transferase family 17 protein ... 31 0.84
At5g19940.1 68418.m02372 plastid-lipid associated protein PAP-re... 31 1.1
At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) / endo... 30 1.5
At5g57560.1 68418.m07191 xyloglucan:xyloglucosyl transferase / x... 30 1.9
At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase, pu... 29 2.6
At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase, pu... 29 2.6
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 2.6
At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase, pu... 29 2.6
At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase, pu... 29 3.4
At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase / x... 29 4.5
At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase / x... 28 5.9
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 28 5.9
At5g52410.2 68418.m06502 expressed protein 28 7.8
At5g52410.1 68418.m06503 expressed protein 28 7.8
At4g14130.1 68417.m02180 xyloglucan:xyloglucosyl transferase, pu... 28 7.8
>At4g25810.1 68417.m03713 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative (XTR6) identical
to xyloglucan endotransglycosylase-related protein
GI:1244758 from [Arabidopsis thaliana]
Length = 286
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 385 FHTYSVQWTPDFIALSVDG 441
FHTYS+ W P I SVDG
Sbjct: 142 FHTYSILWNPQRIIFSVDG 160
>At2g13290.2 68415.m01465 glycosyl transferase family 17 protein low
similarity to beta-1,4-mannosyl-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
from Mus musculus [SP|Q10470], Rattus norvegicus
[SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
profile PF04724 :Glycosyltransferase family 17
Length = 361
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 310 IMDLECRENFLSTKRRRDGTSWGDSFHTYSVQWT 411
+M LE RE S + D +SW S H YS +WT
Sbjct: 213 VMHLEMREYMYSFEFPVDYSSWRASVHIYSRKWT 246
>At2g13290.1 68415.m01464 glycosyl transferase family 17 protein low
similarity to beta-1,4-mannosyl-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
from Mus musculus [SP|Q10470], Rattus norvegicus
[SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
profile PF04724 :Glycosyltransferase family 17
Length = 361
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 310 IMDLECRENFLSTKRRRDGTSWGDSFHTYSVQWT 411
+M LE RE S + D +SW S H YS +WT
Sbjct: 213 VMHLEMREYMYSFEFPVDYSSWRASVHIYSRKWT 246
>At5g19940.1 68418.m02372 plastid-lipid associated protein
PAP-related / fibrillin-related weak hit to Pfam profile
PF04755: PAP_fibrillin
Length = 239
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 65 PPIVSGRITSIGFAFTYGTVEIRAKLPQGDWLYPEILLEPFLKKYGSMNYASG 223
P IV +++ F F G V + KL D + +++ EP K GS+ + G
Sbjct: 154 PDIVRNKVSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYG 206
>At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) /
endo-xyloglucan transferase / xyloglucan
endo-1,4-beta-D-glucanase (SEN4) identical to
endo-xyloglucan transferase gi:944810, SP|P24806 MERI-5
protein precursor (Endo-xyloglucan transferase)
(Xyloglucan endo-1,4-beta-D-glucanase) {Arabidopsis
thaliana}
Length = 269
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 382 SFHTYSVQWTPDFIALSVD 438
+FHTYS+ W P I L+VD
Sbjct: 139 NFHTYSILWNPQRIILTVD 157
>At5g57560.1 68418.m07191 xyloglucan:xyloglucosyl transferase /
xyloglucan endotransglycosylase / endo-xyloglucan
transferase (TCH4) identical to xyloglucan
endotransglycosylase TCH4 protein GI:886116
Length = 284
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 382 SFHTYSVQWTPDFIALSVDG 441
+FHTY++ W P I +VDG
Sbjct: 138 NFHTYTILWNPQRIIFTVDG 157
>At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 277
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 382 SFHTYSVQWTPDFIALSVDG 441
+FHTY + W P I +VDG
Sbjct: 140 NFHTYCITWNPQRIIFTVDG 159
>At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 282
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 382 SFHTYSVQWTPDFIALSVDG 441
+FHTY + W P I +VDG
Sbjct: 145 NFHTYCITWNPQRIIFTVDG 164
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = -1
Query: 543 NGAHLRAGLQQVPRGVRADSRQGVPWRLHSRPLLAVYRQGYEIRCPLNGICMKTVAPRRA 364
NG + + G RAD + GV R R L R+G R PL G ++++ +
Sbjct: 169 NGMDAKPSRDRPEDGRRADEKNGVKER---RRDLIPPRRGDASRSPLRGSRSRSISKTNS 225
Query: 363 VSASFCGEK 337
S S+ GE+
Sbjct: 226 GSKSYSGER 234
>At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 282
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 382 SFHTYSVQWTPDFIALSVDG 441
+FHTY + W P I +VDG
Sbjct: 145 NFHTYCITWNPQRIIFTVDG 164
>At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 305
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 382 SFHTYSVQWTPDFIALSVDGE 444
+FH YS+ W P I +DG+
Sbjct: 143 AFHNYSILWNPSHIVFYIDGK 163
>At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase /
xyloglucan endotransglycosylase / endo-xyloglucan
transferase (XTR3) identical to endoxyloglucan
transferase GI:5533317 from [Arabidopsis thaliana]
Length = 284
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 385 FHTYSVQWTPDFIALSVD 438
FHTYSV W P I VD
Sbjct: 146 FHTYSVLWNPHHIVFMVD 163
>At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase /
xyloglucan endotransglycosylase / endo-xyloglucan
transferase (XTR9) identical to xyloglucan
endotransglycosylase GI:4218963 from [Arabidopsis
thaliana]
Length = 287
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 385 FHTYSVQWTPDFIALSVDG 441
FHTY+V W P I VDG
Sbjct: 146 FHTYTVHWNPVNIIFLVDG 164
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 340 ESSRGTPDP*SVLRTKPYCCSH*VRNTV 257
ES RGT S+LR YCC+ +N +
Sbjct: 132 ESLRGTKSSSSILRLPCYCCAEGCKNNI 159
>At5g52410.2 68418.m06502 expressed protein
Length = 761
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1
Query: 424 ALSVDGEEWARVEAPRDALPAVCAH 498
A V GEE AR+EA A VCAH
Sbjct: 444 AFEVVGEELARIEAEAMAENVVCAH 468
>At5g52410.1 68418.m06503 expressed protein
Length = 510
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1
Query: 424 ALSVDGEEWARVEAPRDALPAVCAH 498
A V GEE AR+EA A VCAH
Sbjct: 193 AFEVVGEELARIEAEAMAENVVCAH 217
>At4g14130.1 68417.m02180 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative (XTR7) almost
identical to xyloglucan endotransglycosylase-related
protein XTR7 GI:1244760 from [Arabidopsis thaliana], one
amino acid difference
Length = 289
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 382 SFHTYSVQWTPDFIALSVD 438
+FHTYS+ W P I VD
Sbjct: 143 NFHTYSIVWRPQHIIFLVD 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,943,970
Number of Sequences: 28952
Number of extensions: 393258
Number of successful extensions: 1116
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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