Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30819
         (971 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    27   5.3  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   7.0  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    26   7.0  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    26   7.0  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   7.0  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    26   9.2  

>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 116 RINMKTFHLNTKIGPRAEFLQPGGSTSSRAA 24
           R+N  +      I  +AEF  PGGS   RAA
Sbjct: 28  RLNTLSNETGCNILAKAEFQNPGGSVKDRAA 58


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 508  SNIGKLDNFHPTTKEEYTEFADLLTKKITFY 600
            S +G+L+  H +   +  EFAD L+K I+++
Sbjct: 1212 SKVGRLNINHVSEPIDSDEFADYLSKSISYH 1242


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 386 VTEKTAEEMTPEQKXAEK-LRQQKLQEESDLRLAMETFGVTEVTLVNLTIS 535
           ++ K  EE    Q   EK +RQ +LQEE   +  +  +  TEV + NL  S
Sbjct: 356 ISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKLAKY--TEVIISNLKAS 404


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 644 LTRSXMNPGNSSLAL*KVIFFVRRSANSVYSSFV 543
           L R+ + P N  L + +++ F+R +A  V +SFV
Sbjct: 214 LNRNELFPSNGPLEVLEILSFLRCNAKCVQNSFV 247


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 519 TNVTSVTPKVSMASRKSDSSCSFCWRSFSANFCS 418
           TN TS+ P   +    S+S+    +  FS++FC+
Sbjct: 184 TNETSIIPSYEIYVNPSNSTYDNTFNKFSSSFCA 217


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 153 WDAD-NFEPKLPTTLAASNKWEGEDEDDNVKES 248
           W++   F  K P TLA +N WE   +D+  K S
Sbjct: 230 WNSTLEFIEKYPETLAKNNLWEWISDDNGKKFS 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,895
Number of Sequences: 5004
Number of extensions: 56092
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)