BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30819 (971 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 27 5.3 SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 7.0 SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 26 7.0 SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 26 7.0 SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom... 26 7.0 SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 26 9.2 >SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces pombe|chr 2|||Manual Length = 351 Score = 26.6 bits (56), Expect = 5.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 116 RINMKTFHLNTKIGPRAEFLQPGGSTSSRAA 24 R+N + I +AEF PGGS RAA Sbjct: 28 RLNTLSNETGCNILAKAEFQNPGGSVKDRAA 58 >SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein Mug36|Schizosaccharomyces pombe|chr 2|||Manual Length = 1646 Score = 26.2 bits (55), Expect = 7.0 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +1 Query: 508 SNIGKLDNFHPTTKEEYTEFADLLTKKITFY 600 S +G+L+ H + + EFAD L+K I+++ Sbjct: 1212 SKVGRLNINHVSEPIDSDEFADYLSKSISYH 1242 >SPCC1827.04 |||ankyrin repeat protein, unknown biological role|Schizosaccharomyces pombe|chr 3|||Manual Length = 600 Score = 26.2 bits (55), Expect = 7.0 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +2 Query: 386 VTEKTAEEMTPEQKXAEK-LRQQKLQEESDLRLAMETFGVTEVTLVNLTIS 535 ++ K EE Q EK +RQ +LQEE + + + TEV + NL S Sbjct: 356 ISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKLAKY--TEVIISNLKAS 404 >SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 335 Score = 26.2 bits (55), Expect = 7.0 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -1 Query: 644 LTRSXMNPGNSSLAL*KVIFFVRRSANSVYSSFV 543 L R+ + P N L + +++ F+R +A V +SFV Sbjct: 214 LNRNELFPSNGPLEVLEILSFLRCNAKCVQNSFV 247 >SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 486 Score = 26.2 bits (55), Expect = 7.0 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -3 Query: 519 TNVTSVTPKVSMASRKSDSSCSFCWRSFSANFCS 418 TN TS+ P + S+S+ + FS++FC+ Sbjct: 184 TNETSIIPSYEIYVNPSNSTYDNTFNKFSSSFCA 217 >SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 372 Score = 25.8 bits (54), Expect = 9.2 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +3 Query: 153 WDAD-NFEPKLPTTLAASNKWEGEDEDDNVKES 248 W++ F K P TLA +N WE +D+ K S Sbjct: 230 WNSTLEFIEKYPETLAKNNLWEWISDDNGKKFS 262 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,203,895 Number of Sequences: 5004 Number of extensions: 56092 Number of successful extensions: 146 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 146 length of database: 2,362,478 effective HSP length: 73 effective length of database: 1,997,186 effective search space used: 499296500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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