Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30819
(971 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117... 42 6e-04
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 29 5.6
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 29 5.6
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690... 29 5.6
06_01_0789 - 5901888-5902940,5903685-5903824,5904606-5904665,590... 29 7.4
04_03_0114 + 11417041-11417188,11418325-11418399,11421007-114211... 29 7.4
01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848 28 9.8
>02_01_0170 -
1174224-1174321,1174429-1174588,1174673-1174823,
1175005-1175156,1175647-1175768,1176773-1176785
Length = 231
Score = 42.3 bits (95), Expect = 6e-04
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Frame = +3
Query: 153 WDADNFEPKLPTTLA--ASNKWEGED-EDDNVKESWE 254
WD+++F+P +P+ A +KW ED E+D+VKESWE
Sbjct: 4 WDSEDFQPAVPSAKAEPLKSKWADEDVEEDDVKESWE 40
Score = 30.3 bits (65), Expect = 2.4
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 434 EKLRQQKLQEESDLRLAMETFG 499
EKLRQQ+L EE+D + E FG
Sbjct: 90 EKLRQQRLVEEADFKSTTELFG 111
Score = 30.3 bits (65), Expect = 2.4
Identities = 10/41 (24%), Positives = 25/41 (60%)
Frame = +1
Query: 523 LDNFHPTTKEEYTEFADLLTKKITFYKAKDEFPGFIXDLVK 645
LD F P ++ ++ E+A+L+ K+ Y+ + G + ++++
Sbjct: 120 LDTFIPKSESDFAEYAELIANKLRPYEKSFHYMGLLKNVMR 160
>11_01_0656 -
5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 29.1 bits (62), Expect = 5.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +1
Query: 514 IGKLDNFHPTTKEEYTEFADLLTKKITF---YKAKDEFPGFIXDLVKNIL 654
+G LD F P EY F D + K YK KDE F+ D+ + L
Sbjct: 552 MGDLDAFFPAATREYAPFVDEMWKDPAIQATYKRKDEL-HFLPDVAEYFL 600
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 29.1 bits (62), Expect = 5.6
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 30 SRTSGSPGLQEFGTRSDFGVQVKSFHINSAADSGVLKMDVSWDADNFEPKLPTTLAASNK 209
S+ S S QE T S+F ++F NS + D+ +D D + A +N+
Sbjct: 364 SQPSISEVQQEISTESNFVATPRAFQ-NSMILTTSRTEDIPFDMDYAD----MDYADTNQ 418
Query: 210 WEGEDEDDNVKESWEM 257
E ED +DN E+W +
Sbjct: 419 VEDEDLEDNELENWNL 434
>04_01_0526 -
6901003-6901056,6901070-6901404,6901423-6901607,
6902201-6904641
Length = 1004
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 514 IGKLDNFHPTTKEEYTEFADLLTKKITFYKAKDEFPGFIXDLVKNILVQMFXSGYPTNKI 693
+ K+D P T++E+ ++ T TF+K GF + + +LV F + P N++
Sbjct: 552 VKKIDKLQPETEKEF--MVEVETIGQTFHKNLVRLLGFCNEGAERLLVYEFMTNGPLNRL 609
>06_01_0789 -
5901888-5902940,5903685-5903824,5904606-5904665,
5904794-5904854
Length = 437
Score = 28.7 bits (61), Expect = 7.4
Identities = 28/129 (21%), Positives = 53/129 (41%)
Frame = +2
Query: 401 AEEMTPEQKXAEKLRQQKLQEESDLRLAMETFGVTEVTLVNLTISTQLQKKSTXXXXXXX 580
++ +T + ++L ++QEESDLR+ ++ F V L L + + K+
Sbjct: 107 SKSLTSKLYLKQQLYGLQMQEESDLRMHVDVFNQLIVDLSKLDVKLDDEDKAIILLCSLP 166
Query: 581 XXXXXXXKPRMSFQDSLXT*SRIF*SRCSSADIRRIKLTVDNSXF*KTEGRXRLIKLKKG 760
+D++ T I S + D+RR K N ++ L+K K
Sbjct: 167 PSYEHVVTTLTYGKDTVKTEEII--SSLLARDLRRSK---KNEAMEASQAESLLVKAKHD 221
Query: 761 HXGARARAK 787
H +++K
Sbjct: 222 HEAGVSKSK 230
>04_03_0114 +
11417041-11417188,11418325-11418399,11421007-11421107,
11422049-11422120,11422239-11422757,11422949-11423149
Length = 371
Score = 28.7 bits (61), Expect = 7.4
Identities = 28/113 (24%), Positives = 44/113 (38%)
Frame = +2
Query: 455 LQEESDLRLAMETFGVTEVTLVNLTISTQLQKKSTXXXXXXXXXXXXXXKPRMSFQDSLX 634
+QEESDLR ++ F V L L + + K+ M +D++
Sbjct: 133 MQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTTLMHGKDTIK 192
Query: 635 T*SRIF*SRCSSADIRRIKLTVDNSXF*KTEGRXRLIKLKKGHXGARARAKFK 793
T I S + D+RR K N ++ L+K K H ++K K
Sbjct: 193 TEEII--SSLLARDLRRSK---KNEAMEASQAESLLVKAKHDHEAGVLKSKEK 240
>01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848
Length = 345
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/77 (22%), Positives = 33/77 (42%)
Frame = +3
Query: 24 GRSRTSGSPGLQEFGTRSDFGVQVKSFHINSAADSGVLKMDVSWDADNFEPKLPTTLAAS 203
G TS +PG Q++ T + H+ ++ ++ V+WD +P T +S
Sbjct: 159 GDGETSNTPG-QQYPTNWNN-------HVKQPTEANCMQSSVNWDNYVSQPPQATVQQSS 210
Query: 204 NKWEGEDEDDNVKESWE 254
W+ + + +WE
Sbjct: 211 GNWDMYVKQQDQANNWE 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,575,723
Number of Sequences: 37544
Number of extensions: 388465
Number of successful extensions: 1087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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