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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30819
         (971 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117...    42   6e-04
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530...    29   5.6  
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562...    29   5.6  
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690...    29   5.6  
06_01_0789 - 5901888-5902940,5903685-5903824,5904606-5904665,590...    29   7.4  
04_03_0114 + 11417041-11417188,11418325-11418399,11421007-114211...    29   7.4  
01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848     28   9.8  

>02_01_0170 -
           1174224-1174321,1174429-1174588,1174673-1174823,
           1175005-1175156,1175647-1175768,1176773-1176785
          Length = 231

 Score = 42.3 bits (95), Expect = 6e-04
 Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
 Frame = +3

Query: 153 WDADNFEPKLPTTLA--ASNKWEGED-EDDNVKESWE 254
           WD+++F+P +P+  A    +KW  ED E+D+VKESWE
Sbjct: 4   WDSEDFQPAVPSAKAEPLKSKWADEDVEEDDVKESWE 40



 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 434 EKLRQQKLQEESDLRLAMETFG 499
           EKLRQQ+L EE+D +   E FG
Sbjct: 90  EKLRQQRLVEEADFKSTTELFG 111



 Score = 30.3 bits (65), Expect = 2.4
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = +1

Query: 523 LDNFHPTTKEEYTEFADLLTKKITFYKAKDEFPGFIXDLVK 645
           LD F P ++ ++ E+A+L+  K+  Y+    + G + ++++
Sbjct: 120 LDTFIPKSESDFAEYAELIANKLRPYEKSFHYMGLLKNVMR 160


>11_01_0656 -
           5301048-5301441,5301779-5301976,5302056-5302228,
           5302691-5302935,5303014-5303191,5303578-5303760,
           5303858-5303962,5304621-5304758,5304846-5305802
          Length = 856

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 514 IGKLDNFHPTTKEEYTEFADLLTKKITF---YKAKDEFPGFIXDLVKNIL 654
           +G LD F P    EY  F D + K       YK KDE   F+ D+ +  L
Sbjct: 552 MGDLDAFFPAATREYAPFVDEMWKDPAIQATYKRKDEL-HFLPDVAEYFL 600


>04_03_0659 -
           18453778-18453903,18453976-18454963,18455496-18456229,
           18456292-18456360,18456528-18456605,18456703-18456789,
           18456881-18456931,18457021-18457092,18457177-18457304,
           18458194-18458275,18458705-18458754,18459043-18459096,
           18459586-18459675,18459903-18459983,18460443-18460538,
           18460960-18461022,18461313-18461402,18461630-18461698,
           18462051-18462291
          Length = 1082

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = +3

Query: 30  SRTSGSPGLQEFGTRSDFGVQVKSFHINSAADSGVLKMDVSWDADNFEPKLPTTLAASNK 209
           S+ S S   QE  T S+F    ++F  NS   +     D+ +D D  +       A +N+
Sbjct: 364 SQPSISEVQQEISTESNFVATPRAFQ-NSMILTTSRTEDIPFDMDYAD----MDYADTNQ 418

Query: 210 WEGEDEDDNVKESWEM 257
            E ED +DN  E+W +
Sbjct: 419 VEDEDLEDNELENWNL 434


>04_01_0526 -
           6901003-6901056,6901070-6901404,6901423-6901607,
           6902201-6904641
          Length = 1004

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +1

Query: 514 IGKLDNFHPTTKEEYTEFADLLTKKITFYKAKDEFPGFIXDLVKNILVQMFXSGYPTNKI 693
           + K+D   P T++E+    ++ T   TF+K      GF  +  + +LV  F +  P N++
Sbjct: 552 VKKIDKLQPETEKEF--MVEVETIGQTFHKNLVRLLGFCNEGAERLLVYEFMTNGPLNRL 609


>06_01_0789 -
           5901888-5902940,5903685-5903824,5904606-5904665,
           5904794-5904854
          Length = 437

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 28/129 (21%), Positives = 53/129 (41%)
 Frame = +2

Query: 401 AEEMTPEQKXAEKLRQQKLQEESDLRLAMETFGVTEVTLVNLTISTQLQKKSTXXXXXXX 580
           ++ +T +    ++L   ++QEESDLR+ ++ F    V L  L +    + K+        
Sbjct: 107 SKSLTSKLYLKQQLYGLQMQEESDLRMHVDVFNQLIVDLSKLDVKLDDEDKAIILLCSLP 166

Query: 581 XXXXXXXKPRMSFQDSLXT*SRIF*SRCSSADIRRIKLTVDNSXF*KTEGRXRLIKLKKG 760
                        +D++ T   I  S   + D+RR K    N     ++    L+K K  
Sbjct: 167 PSYEHVVTTLTYGKDTVKTEEII--SSLLARDLRRSK---KNEAMEASQAESLLVKAKHD 221

Query: 761 HXGARARAK 787
           H    +++K
Sbjct: 222 HEAGVSKSK 230


>04_03_0114 +
           11417041-11417188,11418325-11418399,11421007-11421107,
           11422049-11422120,11422239-11422757,11422949-11423149
          Length = 371

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 28/113 (24%), Positives = 44/113 (38%)
 Frame = +2

Query: 455 LQEESDLRLAMETFGVTEVTLVNLTISTQLQKKSTXXXXXXXXXXXXXXKPRMSFQDSLX 634
           +QEESDLR  ++ F    V L  L +    + K+                  M  +D++ 
Sbjct: 133 MQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTTLMHGKDTIK 192

Query: 635 T*SRIF*SRCSSADIRRIKLTVDNSXF*KTEGRXRLIKLKKGHXGARARAKFK 793
           T   I  S   + D+RR K    N     ++    L+K K  H     ++K K
Sbjct: 193 TEEII--SSLLARDLRRSK---KNEAMEASQAESLLVKAKHDHEAGVLKSKEK 240


>01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848
          Length = 345

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 17/77 (22%), Positives = 33/77 (42%)
 Frame = +3

Query: 24  GRSRTSGSPGLQEFGTRSDFGVQVKSFHINSAADSGVLKMDVSWDADNFEPKLPTTLAAS 203
           G   TS +PG Q++ T  +        H+    ++  ++  V+WD    +P   T   +S
Sbjct: 159 GDGETSNTPG-QQYPTNWNN-------HVKQPTEANCMQSSVNWDNYVSQPPQATVQQSS 210

Query: 204 NKWEGEDEDDNVKESWE 254
             W+   +  +   +WE
Sbjct: 211 GNWDMYVKQQDQANNWE 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,575,723
Number of Sequences: 37544
Number of extensions: 388465
Number of successful extensions: 1087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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