Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30819
         (971 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97670-1|AAC78729.1|  258|Homo sapiens eukaryotic translation in...    49   3e-05
BC002719-1|AAH02719.1|  258|Homo sapiens eukaryotic translation ...    49   3e-05
AK023388-1|BAB14555.1|  258|Homo sapiens protein ( Homo sapiens ...    49   3e-05
AF090923-1|AAF24039.1|  111|Homo sapiens PRO0391 protein.              35   0.52 

>U97670-1|AAC78729.1|  258|Homo sapiens eukaryotic translation
           initiation factor eIF3, p35 subunit protein.
          Length = 258

 Score = 48.8 bits (111), Expect = 3e-05
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = +2

Query: 410 MTPEQKXAEKLRQQKLQEESDLRLAMETFGV 502
           +TPE++ A+KLR +KLQEESDL LA ETFGV
Sbjct: 108 LTPEEQLADKLRLKKLQEESDLELAKETFGV 138



 Score = 38.7 bits (86), Expect = 0.032
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
 Frame = +3

Query: 150 SWDADNFEPKLPTT------LAASNKWEGEDEDDNVKESWE 254
           SWDAD F  + P         A  ++W GEDED++VK++W+
Sbjct: 13  SWDADAFSVEDPVRKVGGGGTAGGDRWGGEDEDEDVKDNWD 53



 Score = 37.1 bits (82), Expect = 0.097
 Identities = 14/47 (29%), Positives = 30/47 (63%)
 Frame = +1

Query: 523 LDNFHPTTKEEYTEFADLLTKKITFYKAKDEFPGFIXDLVKNILVQM 663
           +D  +P++++++TEF  LL  KIT Y+    +  F+  LV+++ + +
Sbjct: 145 IDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISL 191


>BC002719-1|AAH02719.1|  258|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 1 alpha, 35kDa protein.
          Length = 258

 Score = 48.8 bits (111), Expect = 3e-05
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = +2

Query: 410 MTPEQKXAEKLRQQKLQEESDLRLAMETFGV 502
           +TPE++ A+KLR +KLQEESDL LA ETFGV
Sbjct: 108 LTPEEQLADKLRLKKLQEESDLELAKETFGV 138



 Score = 41.5 bits (93), Expect = 0.004
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
 Frame = +3

Query: 150 SWDADNFEPKLPTT------LAASNKWEGEDEDDNVKESWE 254
           SWDAD F  + P         A  ++WEGEDED++VK++W+
Sbjct: 13  SWDADAFSVEDPVRKVGGGGTAGGDRWEGEDEDEDVKDNWD 53



 Score = 37.1 bits (82), Expect = 0.097
 Identities = 14/47 (29%), Positives = 30/47 (63%)
 Frame = +1

Query: 523 LDNFHPTTKEEYTEFADLLTKKITFYKAKDEFPGFIXDLVKNILVQM 663
           +D  +P++++++TEF  LL  KIT Y+    +  F+  LV+++ + +
Sbjct: 145 IDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISL 191


>AK023388-1|BAB14555.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13326 fis, clone OVARC1001766, highly similar to
           Homo sapiens eukaryotic translation initiation factor
           eIF3, p35 ).
          Length = 258

 Score = 48.8 bits (111), Expect = 3e-05
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = +2

Query: 410 MTPEQKXAEKLRQQKLQEESDLRLAMETFGV 502
           +TPE++ A+KLR +KLQEESDL LA ETFGV
Sbjct: 108 LTPEEQLADKLRLKKLQEESDLELAKETFGV 138



 Score = 41.5 bits (93), Expect = 0.004
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
 Frame = +3

Query: 150 SWDADNFEPKLPTT------LAASNKWEGEDEDDNVKESWE 254
           SWDAD F  + P         A  ++WEGEDED++VK++W+
Sbjct: 13  SWDADAFSVEDPVRKVGGGGTAGGDRWEGEDEDEDVKDNWD 53



 Score = 37.1 bits (82), Expect = 0.097
 Identities = 14/47 (29%), Positives = 30/47 (63%)
 Frame = +1

Query: 523 LDNFHPTTKEEYTEFADLLTKKITFYKAKDEFPGFIXDLVKNILVQM 663
           +D  +P++++++TEF  LL  KIT Y+    +  F+  LV+++ + +
Sbjct: 145 IDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISL 191


>AF090923-1|AAF24039.1|  111|Homo sapiens PRO0391 protein.
          Length = 111

 Score = 34.7 bits (76), Expect = 0.52
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = +1

Query: 535 HPTTKEEYTEFADLLTKKITFYKAKDEFPGFIXDLVKNILVQM 663
           +P++++++TEF  LL  KIT Y+    +  F+  LV+++ + +
Sbjct: 2   NPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISL 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,922,720
Number of Sequences: 237096
Number of extensions: 2174698
Number of successful extensions: 8366
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8366
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12936258326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)