Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30819
         (971 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10986-7|AAA28014.2|  362|Caenorhabditis elegans Hypothetical pr...    32   0.54 
L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans chrom...    30   2.9  
AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical ...    30   2.9  
Z68004-3|CAA91983.2|  380|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>L10986-7|AAA28014.2|  362|Caenorhabditis elegans Hypothetical
           protein F10E9.3 protein.
          Length = 362

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 451 EATGRIRFATSHGNLWCNRSNIGKLDNFHPTTKEEYTEFADLLTKKITFY 600
           E+ G I  A+SH N+      I  L+      K+EYT F+  L   IT Y
Sbjct: 310 ESIGNIARASSHHNMLLGSMIINGLNTLQSRDKDEYTNFSSDLFSLITRY 359


>L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans
           chromodomain proteinprotein 1 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +2

Query: 383 LVTEKTAEEMTPEQKXAEKLRQQKLQEESDLRLAMETFGVTEVTLVNLTIST 538
           L +EK  +E   E+K  EK  +++ +EE +++L +    V E T+V   ++T
Sbjct: 204 LESEKNEKE-EEEEKVEEKKEEEEEEEEEEIQLVIVEKTVIETTIVEPAVAT 254


>AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical
           protein Y40B10A.4 protein.
          Length = 697

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 383 LVTEKTAEEMTPEQKXAEKLRQQKLQEESDLRLAMETFGVTEVTLVNLTIS 535
           +VTE+   E+  + K  E  R++ + +  D+  A E   VTE+ + N TIS
Sbjct: 494 IVTERFIHEIVDDDKD-EDFRKKCINDMDDILEAAEFMTVTELNIKNRTIS 543


>Z68004-3|CAA91983.2|  380|Caenorhabditis elegans Hypothetical
           protein F47B10.3 protein.
          Length = 380

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 537 VEIVKFTNVTSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVI 409
           VE+  F ++   T   +  S   DS  SFC+ SF  NF  G++
Sbjct: 76  VEVAYFISIYFYTSSYTFWSWIHDSVVSFCYSSFLFNFQYGMV 118


>Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical
           protein F17C8.1 protein.
          Length = 1253

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 383 LVTEKTAEEMTPEQKXAEKLRQQKLQEESDLRLAMETFGVTEVTLVNLTISTQLQKKST 559
           L ++K++++ T +QK AEKL+            A E  G   + L     STQL  K +
Sbjct: 522 LHSQKSSKKSTLKQKWAEKLKMNHTNSYPMRAAAREGGGSLRIKLAERNRSTQLLPKES 580


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,894,945
Number of Sequences: 27780
Number of extensions: 322438
Number of successful extensions: 984
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)