Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30819
         (971 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37475.1 68418.m04510 translation initiation factor-related s...    40   0.002
At1g66070.1 68414.m07499 translation initiation factor-related s...    38   0.010
At4g27850.1 68417.m03999 proline-rich family protein contains pr...    29   4.7  
At3g21160.1 68416.m02673 mannosyl-oligosaccharide 1,2-alpha-mann...    29   6.2  
At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P329...    28   8.1  

>At5g37475.1 68418.m04510 translation initiation factor-related
           similar to Eukaryotic translation initiation factor 3
           subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
           (Swiss-Prot:O75822) [Homo sapiens]
          Length = 225

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = +3

Query: 153 WDADNFEPKLPTTLAASNKWEGEDEDDN-VKESWE 254
           W+A++F+P LP+ +   + W+ ED D+N +K+SWE
Sbjct: 4   WEAEDFQP-LPSKVELKSNWDDEDVDENDIKDSWE 37



 Score = 33.1 bits (72), Expect = 0.29
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 416 PEQKXAEKLRQQKLQEESDLRLAMETFGV-TEVTLVNLTI 532
           P    AEKLR Q+L EE+D +   E FGV TE   V++ I
Sbjct: 82  PLDPIAEKLRMQRLVEEADYQSTAELFGVKTEEKSVDMLI 121


>At1g66070.1 68414.m07499 translation initiation factor-related
           similar to Eukaryotic translation initiation factor 3
           subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
           (Swiss-Prot:O75822) [Homo sapiens]
          Length = 226

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 19/38 (50%), Positives = 23/38 (60%)
 Frame = +2

Query: 395 KTAEEMTPEQKXAEKLRQQKLQEESDLRLAMETFGVTE 508
           K A +  P    AEKLRQQ+L EE+D R   E FGV +
Sbjct: 76  KEAPKEKPLDPIAEKLRQQRLVEEADYRATAELFGVKD 113



 Score = 33.1 bits (72), Expect = 0.29
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 153 WDADNFEPKLPTTLAASNKWEGEDEDDN-VKESWE 254
           W+ +   P LP  +   + W+ ED D+N +K+SWE
Sbjct: 4   WEDEKIAP-LPAKVELKSNWDDEDVDENEIKDSWE 37


>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 388 DREDCRRNDSRAEVX*ETSPAEATGRIRFATSHGNLWCN--RSNIGK 522
           +RE+   N+S+ E     SP EA   IR   +H NL+C   ++NI K
Sbjct: 28  EREENNNNESQEETRTSRSPNEALDEIRRQQTH-NLYCPKCKTNITK 73


>At3g21160.1 68416.m02673 mannosyl-oligosaccharide
           1,2-alpha-mannosidase, putative similar to
           mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
           max][GI:6552504]
          Length = 572

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 135 LKMDVSWDADNFEPKLPTTLAASNKWEGEDEDDNVKESWEM 257
           L  +++W   NF    PT LA  N +     D +V  SW +
Sbjct: 402 LAEELAWTCYNFYQSTPTKLAGENYFFNSGSDMSVGTSWNI 442


>At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P32962
           Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 339

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 230 ILVFPFPFVGGCQRGREFGLEV 165
           ++VFP  F+GG  RG  FGL V
Sbjct: 53  LVVFPEAFIGGYPRGFRFGLGV 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,063,971
Number of Sequences: 28952
Number of extensions: 304039
Number of successful extensions: 886
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2353558416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)