Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30818
         (758 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000051ACE1 Cluster: PREDICTED: similar to vasa intro...    41   0.029
UniRef50_Q2GZU6 Cluster: Putative uncharacterized protein; n=1; ...    36   0.82 
UniRef50_Q007R7 Cluster: Patched protein; n=4; Eukaryota|Rep: Pa...    31   0.95 
UniRef50_Q9V426 Cluster: CG4170-PA, isoform A; n=2; Sophophora|R...    36   1.4  
UniRef50_Q54KT2 Cluster: Putative uncharacterized protein; n=1; ...    30   3.7  

>UniRef50_UPI000051ACE1 Cluster: PREDICTED: similar to vasa intronic
           gene CG4170-PA, isoform A; n=1; Apis mellifera|Rep:
           PREDICTED: similar to vasa intronic gene CG4170-PA,
           isoform A - Apis mellifera
          Length = 414

 Score = 41.1 bits (92), Expect = 0.029
 Identities = 25/67 (37%), Positives = 31/67 (46%)
 Frame = +1

Query: 1   EDLSQWKNLVLLXXXXXXXXXXXXXXXXXXXXXXXPQRVGRQKRLLGIEFTFTLRCDARR 180
           EDL++WK +  L                       PQRVGRQKR+LGIE  F+   D+RR
Sbjct: 296 EDLTRWKKMYALERKKEGADDEEEEEEEYDAAAEYPQRVGRQKRVLGIEIQFS---DSRR 352

Query: 181 CGRARPR 201
               R R
Sbjct: 353 GSGGRGR 359


>UniRef50_Q2GZU6 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 609

 Score = 36.3 bits (80), Expect = 0.82
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 148 TQCPTNASG-DPRAVDSRPDRIPRQFPHHHHGHLPSCVPTEP 26
           TQ PT+ +   P  +D  P + P Q PHHHHG        +P
Sbjct: 507 TQPPTSQNPTQPSELDPNPHQHPHQHPHHHHGQYQHASELDP 548


>UniRef50_Q007R7 Cluster: Patched protein; n=4; Eukaryota|Rep: Patched
            protein - Lytechinus variegatus (Sea urchin)
          Length = 1416

 Score = 30.7 bits (66), Expect(2) = 0.95
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 79   QFPHHHHGHLPSCVPTEPGFSTGSS 5
            Q+PHHHH H P C      FST +S
Sbjct: 1299 QYPHHHHQH-PHCSRQSFPFSTNNS 1322



 Score = 24.2 bits (50), Expect(2) = 0.95
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -2

Query: 127  SGDPRAVDSRPDRIPRQFPH-HHHGH 53
            +  P +  +RP R   ++PH  HH H
Sbjct: 1267 ANSPNSQRTRPQRTSSKYPHRQHHQH 1292


>UniRef50_Q9V426 Cluster: CG4170-PA, isoform A; n=2; Sophophora|Rep:
           CG4170-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 490

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = +1

Query: 1   EDLSQWKNLVLLXXXXXXXXXXXXXXXXXXXXXXXPQRVGRQKRLLGIEFTFTLRCDARR 180
           ED +QWK +V+L                       PQRVGRQ+R+L I+F F    D RR
Sbjct: 321 EDTTQWKKMVVLTSNKKKENDSEEELEYDPALY--PQRVGRQQRVLDIQFNFN---DGRR 375

Query: 181 CG 186
            G
Sbjct: 376 GG 377


>UniRef50_Q54KT2 Cluster: Putative uncharacterized protein; n=1;
          Dictyostelium discoideum AX4|Rep: Putative
          uncharacterized protein - Dictyostelium discoideum AX4
          Length = 72

 Score = 29.9 bits (64), Expect(2) = 3.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 70 HHHHGHLPSCVPTEP 26
          HHHH HLPS  P+ P
Sbjct: 40 HHHHHHLPSSPPSPP 54



 Score = 23.4 bits (48), Expect(2) = 3.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 76 FPHHHHGH 53
          +PHHHH H
Sbjct: 16 YPHHHHHH 23


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,871,676
Number of Sequences: 1657284
Number of extensions: 10313352
Number of successful extensions: 32896
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32722
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)