Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30818
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778...    32   0.43 
04_04_0254 - 23951495-23951902,23952000-23952155,23952344-239524...    31   0.75 
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558...    30   2.3  
11_01_0732 + 6065852-6066531,6067066-6067141,6067231-6067357,606...    29   4.0  
04_03_1022 - 21778315-21779007                                         28   7.0  
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624...    28   7.0  

>05_03_0468 +
           14376926-14377183,14377534-14377710,14377802-14377867,
           14378009-14378134,14378499-14378678,14379015-14379179,
           14380185-14380538
          Length = 441

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 100 RPDRIPRQFPHHHHGHLPSCVPTEP 26
           +P + P    HHHH H PS  P+ P
Sbjct: 8   QPPQTPPSLDHHHHHHTPSVGPSSP 32


>04_04_0254 -
           23951495-23951902,23952000-23952155,23952344-23952485,
           23952772-23953160,23953833-23953948,23954290-23954371
          Length = 430

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -2

Query: 82  RQFPHHHHGHLPSCVPTEPGFSTGSSL 2
           R  P HHHGHL S   T  GFS+  SL
Sbjct: 312 RHIPEHHHGHLKSVKIT--GFSSAKSL 336


>04_04_1636 +
           34951841-34954322,34954440-34954627,34955737-34955838,
           34956101-34956177,34956258-34956319,34956504-34956511
          Length = 972

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 79  QFPHHHHGHLPSCVPTEP 26
           Q  HH HGHLP+  P +P
Sbjct: 190 QHQHHGHGHLPASFPDQP 207


>11_01_0732 +
           6065852-6066531,6067066-6067141,6067231-6067357,
           6068084-6068289
          Length = 362

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 130 ASGDPRAVDSRPDRIPRQFPHHHHGH 53
           A+  P A D  P   P+  PHH HGH
Sbjct: 23  AAAGPYAGDHGPIARPQGAPHHRHGH 48


>04_03_1022 - 21778315-21779007
          Length = 230

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -2

Query: 88  IPRQFPHHHHGHLPSCVP-TEPG 23
           IP   PHHHH   P+  P T PG
Sbjct: 85  IPPHHPHHHHPPTPAPAPSTTPG 107


>01_01_0802 +
           6246267-6247541,6247625-6247682,6247806-6248129,
           6248321-6248355
          Length = 563

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 261 PGTASPRKPAEVDDSK 308
           P +A+PRKP E+D+SK
Sbjct: 257 PSSAAPRKPKEIDNSK 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,714,176
Number of Sequences: 37544
Number of extensions: 272264
Number of successful extensions: 923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)