Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30818
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1)            29   4.1  
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_56875| Best HMM Match : LON (HMM E-Value=0)                         28   7.2  
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             28   9.5  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 237 KSRRSWGAPGTASPRKPAEVDDSKD 311
           KS  S+G  G AS +KPA  DD+ D
Sbjct: 74  KSVESFGPAGAASEQKPAPADDNDD 98


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 237 KSRRSWGAPGTASPRKPAEVDDSKD 311
           KS  S+G  G AS +KPA  DD+ D
Sbjct: 48  KSVESFGPAGAASEQKPAPADDNDD 72


>SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1)
          Length = 410

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 106 DSRPDRIPRQFPHHHHGHLPSCVPTE 29
           D  PD+IP Q P   H H+P  +P +
Sbjct: 358 DQIPDQIPDQIPDQIHCHIPYQIPDQ 383


>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 371 VTNYNVCTVIFEVNIQYIYKSVYCITLKSVYVVIGSK 481
           + N NV   I E   QY+Y S+  +T+  V+ ++GSK
Sbjct: 283 IVNVNVSPNIIE---QYVYGSISAVTVGKVFRMLGSK 316


>SB_56875| Best HMM Match : LON (HMM E-Value=0)
          Length = 925

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = -2

Query: 559 IFP--PLVPFHRNMSIPR--QVASYNQLTKFRAN 470
           +FP  PL+P HRN   PR  ++    Q+++FR N
Sbjct: 134 VFPEVPLIPVHRNPVFPRFVKMLEVYQISEFRKN 167


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 35  WNARRKVTVVMMRK-LTRNTIWPTIHSAWVARSVCWAL 145
           W  R    VV   K + RN+ W   HS WV R+  W +
Sbjct: 435 WVDRNSRWVVRNSKWVVRNSKWVVRHSKWVVRNSKWVV 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,484,956
Number of Sequences: 59808
Number of extensions: 327677
Number of successful extensions: 837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)