Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30816
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   2.3  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.1  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    25   5.4  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   7.1  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   7.1  

>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 22  FCFSYLYSNFNSFRLQHA**NNLGSTR 102
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 122 VFTFPVFFLDYEGQLWNVYCSKQLPSTTRA 211
           + TFP    D + QLWNV     L S +++
Sbjct: 72  ILTFPFLDPDSQNQLWNVNFRNLLKSLSKS 101


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 418 SKTLIDFEKKKLYDIN*L---SLEKANNSSHWLQNEELKLQL 302
           SKTL D +K+KL + N +   SL K  N S  LQ E+L   L
Sbjct: 152 SKTLTDLKKRKLVERNKIMYFSLRKGPNFS--LQIEKLNTDL 191


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 280 PYKKKDLFPCVIVSQHRAHAQL 215
           P K+KDLFPC    +   H ++
Sbjct: 165 PTKRKDLFPCNFFIRRGVHLKV 186


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 201 RREPFS*ACARCCDTITQGKRSFFL 275
           R   FS  C  CC T+++  R FF+
Sbjct: 453 RTMSFSKMCPLCCTTLSKFVRHFFM 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,948
Number of Sequences: 5004
Number of extensions: 25891
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)