Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30816
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0427 + 25137036-25137119,25137687-25137826,25139775-251398...    29   2.3  
07_01_0134 + 977527-977757,977842-977937,978479-978519,979550-97...    27   9.2  
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688...    27   9.2  

>04_04_0427 +
           25137036-25137119,25137687-25137826,25139775-25139846,
           25141160-25141470,25141595-25141705,25143548-25143640,
           25144063-25144212,25145062-25145120,25145636-25145693,
           25146351-25146622
          Length = 449

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 361 LEKANNSSHWLQNEELKLQLRY*NQVQPYKKKDLFPCVIVSQHRAHAQLKGSRR 200
           L K++  S +L  E+  +Q       QP+  +   P    S HR++ QLKG+++
Sbjct: 32  LIKSDAESVFLCEEKKAMQQPSSTSTQPHASRKQQPVSSSSTHRSNGQLKGNKK 85


>07_01_0134 +
           977527-977757,977842-977937,978479-978519,979550-979661,
           980100-980180,980502-980567
          Length = 208

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 90  RKYTLCRGNRLCLHSRCFSLTTKGSSGMFIAVN 188
           R+ T  R + L +  RCF++ T  ++ + +AVN
Sbjct: 32  RRPTRSRSDPLLIVCRCFNVVTAATAALCVAVN 64


>03_01_0006 +
           65675-65808,66385-66457,68290-68526,68648-68785,
           68871-69005,69131-69310,69495-69701,69821-69943,
           70240-70359,70758-70880,72067-72171,72254-72398,
           73443-73607,73669-73907,74452-74484,74977-75058,
           75200-75360,75739-75951,76789-76971,77051-77220,
           77375-77474
          Length = 1021

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 235 AVTLSHKGKDLFFYKAELDFNI*VVILVLRFVTSVMS 345
           A+ L+H G+D    +  +D++  V I++L F+ S +S
Sbjct: 135 AIALAHGGRDARGKRMRIDYHDFVGIVLLLFINSTIS 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,378,081
Number of Sequences: 37544
Number of extensions: 153041
Number of successful extensions: 277
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)